Microbulbifer discodermiae sp. nov. and Microbulbifer jejuensis sp. nov., isolated from marine sponges.
Two Gram-stain-negative, facultatively anaerobic, non-motile and rod-shaped bacterial strains, designated 2201CG32-9T and 2304DJ12-6T, were isolated from marine sponges collected in the Republic of Korea. Both strains exhibited catalase and oxidase activities but tested negative for nitrate reduction and indole production. Strain 2201CG32-9T showed optimal growth at 30 °C and pH 7.0-8.0 in the presence of 3% (w/v) NaCl, whereas strain 2304DJ12-6T grew optimally at 25 °C, pH 8.0 and 3% (w/v) NaCl. Phylogenetic analysis of the 16S rRNA gene and phylogenomic analysis of genome sequences indicated that strains 2201CG32-9T and 2304DJ12-6T represented novel species within the genus Microbulbifer. Based on whole-genome phylogenomic analysis, the two strains were most closely related to Microbulbifer okhotskensis OS29T and Microbulbifer variabilis ATCC 700307T, respectively. The average nucleotide identity values of these strains were found to be <75.9%, and their digital DNA-DNA hybridization values were <22.5%. The DNA G+C contents of strains 2201CG32-9T and 2304DJ12-6T were 56.5 and 53.5 mol%, respectively. In both strains, ubiquinone-8 was identified as the predominant respiratory quinone, and the major cellular fatty acids (>5.0%) were C16:0, iso-C11:0 3-OH, iso-C15:0, iso-C17:0, summed feature 8 and summed feature 9. As for polar lipids, both strains comprised phosphatidylglycerol, phosphatidylethanolamine and phosphoglycolipid as common major polar lipids. Strains 2201CG32-9T and 2304DJ12-6T are classified as two novel species of the genus Microbulbifer based on a polyphasic taxonomic approach, for which the names Microbulbifer discodermiae sp. nov. (2201CG32-9T=KACC 23829T=JCM 37223T) and Microbulbifer jejuensis sp. nov. (2304DJ12-6T=KACC 23832T=MCCC 1K09533T) are proposed, respectively.
- Research Article
1
- 10.1007/s10482-023-01838-9
- May 10, 2023
- Antonie van Leeuwenhoek
A novel strain designated NBU1457T, was isolated from marine sediment sampled on Meishan Island located in the East China Sea. Cells of strain NBU1457T was Gram-negative, facultatively anaerobic, non-motile and ovoid-shaped. Strain NBU1457T grew optimally at 37°C, NaCl concentration of 2.0-3.0% (w/v) and pH 6.5-7.5. Catalase and oxidase activities, urease, nitrate reduction and H2S production were positive. Indole production, methyl red reaction, hydrolysis of starch, gelatin, casein, Tweens 20, 40, 60 and 80 were negative. Comparative analysis of the 16S rRNA gene sequence showed highest similarities to the species with validated name Oricola thermophila MEBiC13590T (98.8%), Oricola cellulosilytica CC-AMH-0T (97.9%) and Oricola indica JL-62T (97.9%). Phylogenetic analyses indicated that strain NBU1457T clustered with the genus Oricola and closely related to strains Oricola thermophila MEBiC13590T, Oricola cellulosilytica CC-AMH-0T and Oricola indica JL-62T. The average nucleotide identity and digital DNA-DNA hybridization values between strain NBU1457T and related species of genus Oricola were well below the threshold limit for prokaryotic species delineation. The DNA G + C content was 63.2%. The major cellular fatty acid was summed feature 8 (C18:1 ω7c and/or C18:1 ω6c). The major polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylmonomethylethanolamine, sulfoquinovosyldiacylglycerol and phosphatidylglycerol. The only respiratory quinone was ubiquinone-10 (Q-10). Combining results of our phenotypic, chemotaxonomic and genotypic data, strain NBU1457T is considered to be a representative in the genus Oricola, which the name Oricola nitratireducens sp. nov. is proposed. The type strain of the new species is NBU1457T (= KCTC 82225T = MCCC 1K04764T).
- Research Article
3
- 10.1007/s00203-022-03161-9
- Aug 10, 2022
- Archives of Microbiology
A Gram-negative, aerobic, non-motile bacterium КMM 9862T was isolated from a deep bottom sediment sample obtained from the Okhotsk Sea, Russia. Based on the 16S rRNA gene and whole genome sequences analyses the novel strain КMM 9862T fell into the genus Microbulbifer (class Gammaproteobacteria) sharing the highest 16S rRNA gene sequence similarities of 97.4% to Microbulbifer echini AM134T and Microbulbifer epialgicus F-104T, 97.3% to Microbulbifer pacificus SPO729T, 97.1% to Microbulbifer variabilis ATCC 700307T, and similarity values of < 97.1% to other recognized Microbulbifer species. The average nucleotide identity and digital DNA-DNA hybridization values between strain КMM 9862T and M. variabilis ATCC 700307T and M. thermotolerans DSM 19189T were 80.34 and 77.72%, and 20.2 and 19.0%, respectively. Strain КMM 9862T contained Q-8 as the predominant ubiquinone and C16:0, C16:1 ω7c, C12:0, and C10:0 3-OH as the major fatty acids. The polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylcholine, an unidentified aminophospholipid, an unidentified aminolipid, two unidentified phospholipids, phosphatidic acid, and an unidentified lipid. The DNA G+C content of 49.8% was calculated from the genome sequence. On the basis of the phylogenetic evidence and distinctive phenotypic characteristics, the marine bacterium KMM 9862T is proposed to be classified as a novel species Microbulbifer okhotskensis sp. nov. The type strain of the species is strain KMM 9862T (= KACC 22804T).
- Research Article
15
- 10.1099/ijsem.0.004782
- Apr 22, 2021
- International Journal of Systematic and Evolutionary Microbiology
A Gram-stain-negative, ovoid-shaped, motile and strictly aerobic bacterium, designated ZQ172T, was isolated from marine sediment sampled on Zhoushan Island located in the East China Sea. Strain ZQ172T grew optimally at temperatures of 25-30 °C, at NaCl concentration of 2.0 % (w/v) and at pH 7.0-8.5. Catalase and oxidase activities, urease, and nitrate reduction were positive. Indole production, methyl red reaction, H2S production and hydrolysis of gelatin, starch, casein and Tweens 20, 40, 60 and 80 were negative. The major cellular fatty acid was summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c). The only respiratory quinone was ubiquinone-10. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and phosphatidylcholine. Comparative analysis of the 16S rRNA gene sequence showed highest similarities to Shimia aestuarii JC2049T (97.5 %), Shimia abyssi JAMH 043T (97.5 %) and Shimia thalassica CECT 7735T (97.3 %). Phylogenetic analyses indicated that strain ZQ172T clustered with the genus Shimia and was closely related to Shimia thalassica CECT 7735T. The average nucleotide identity and digital DNA-DNA hybridization values between strain ZQ172T and related species of the genus Shimia were well below the threshold limit for prokaryotic species delineation. The DNA G+C content was 59.6 mol%. Based on its phenotypic, chemotaxonomic and genotypic data, strain ZQ172T is considered to be a representative of a novel species in the genus Shimia, for which the name Shimia sediminis sp. nov. is proposed. The type strain is ZQ172T (=KCTC 62578T=MCCC 1K03531T).
- Research Article
6
- 10.1099/ijsem.0.005306
- Mar 30, 2022
- International journal of systematic and evolutionary microbiology
A Gram-negative, non-motile, strictly aerobic and rod- or filamentous-shaped strain, CJU-R4T, was isolated from a flower of royal azalea (Rhododendron schlippenbachii) collected in the Republic of Korea. Strain CJU-R4T was catalase-positive and oxidase-negative, and grew at 15-33 °C (optimum, 28-20 °C), at pH 5.0-8.0 (optimum, pH 7.0-8.0), and in the presence of 0-1 % NaCl (w/v; optimum, 0 %). Strain CJU-R4T had the highest 16S rRNA gene sequence similarity to Spirosoma oryzae RHs22T (96.6 %), revealing less than 93 % sequence similarity to other type strains. Phylogenetic and phylogenomic analysis also revealed strain CJU-R4T formed a robust cluster with S. oryzae RHs22T. The major fatty acids were summed feature 3 (comprising C16 : 1 ω7c and/or C16 : 1 ω6c; 33.0 %), C16 : 1 ω5c (22.1 %), iso-C15 : 0 (12.6 %) and C16 : 0 (10.7 %). The polar lipids were composed of phosphatidylethanolamine, three unidentified aminophospholipids, one unidentified phospholipid and four unidentified lipids. Menaquinone-7 was detected as the sole respiratory quinone. The genomic DNA G+C content was 55.2 mol%. The average nucleotide identity and digital DNA-DNA hybridization values between strain CJU-R4T and Spirosoma oryzae DSM 28354T were 81.5 and 23.9 %, respectively. Based on the results of the phenotypic and genotypic analyses, strain CJU-R4T is considered to represent a novel species of the genus Spirosoma, for which the name Spirosoma rhododendri sp. nov. is proposed. The type strain is CJU-R4T (=KACC 21264T=NBRC 114513T).
- Research Article
- 10.1099/ijsem.0.006886
- Aug 11, 2025
- International journal of systematic and evolutionary microbiology
The strain tmT was isolated from black soil applied with the herbicide atrazine in Northeast China. Phylogenetic analyses based on 16S rRNA gene sequences and phylogenomic analysis revealed that the strain tmT is classified to the genus Variovorax. The DNA G+C content of strain tmT was 67.5 mol%. The major fatty acids were C16 : 0, C10 : 0 3-OH, C17 : 0 cyclo, summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c) and summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c) in strain tmT. Strain tmT contained Q-8 as the major respiratory quinone. Polar lipids in strain tmT were mainly comprised of diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. Initial selection of phylogenetically related taxa was performed through whole-genome phylogenomic analysis encompassing strain tmT and all validly published members of the genus Variovorax. The calculation of the average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain tmT and phylogenetically proximal strains demonstrated that the values of ANI and dDDH with Variovorax sp. 1140, Variovorax sp. 1133, Variovorax sp. 369, Variovorax sp. 1128, Variovorax sp. 1126, Variovorax paradoxus SMAGNO29, V. paradoxus 110B, Variovorax sp. BK613 and V. paradoxus DS996 were well over thresholds (95-96%, 70%), of which strains SMAGNO29, 110B and DS996 were classified as V. paradoxus in previous publications. However, the ANI and dDDH values between these strains and the type strain V. paradoxus were significantly lower than the established taxonomic thresholds for species delineation. Thus, we deduced that these nine strains belong to a novel species with strain tmT, Variovorax atrisoli sp. nov. We further performed phenotypic and chemotaxonomic tests which revealed that there were high levels of intraspecies variation. Based on these results, strain tmT (=GDMCC 1.4848T=KCTC 8741T) was designated as the type strain of the novel species for which we propose the name V. atrisoli sp. nov.
- Research Article
7
- 10.1099/ijsem.0.004357
- Aug 13, 2020
- International Journal of Systematic and Evolutionary Microbiology
A novel actinomycete, designated strain TRM 66233T, was isolated from Apocynum venetum L. collected from the Xinjiang Uygur Autonomous Region of China and characterized using a polyphasic taxonomic approach. Phylogenetic analysis based on 16S rRNA gene sequences affiliated strain TRM 66233T with the genus Streptomyces. Strain TRM 66233T showed a high similarity value to Streptomyces bikiniensis NRRL B-1049T (98.07 %) based on the 16S rRNA gene phylogenetic tree. The whole-cell sugar pattern of TRM 66233T consisted of glucose, galactose, mannose and ribose. The predominant menaquinones were MK-9(H2), MK-9(H6), MK-9(H8) and MK-9(H10). The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and four unidentified lipids. The major fatty acids were iso-C15 : 0, anteiso-C15 : 0, iso-C16 : 0, C16 : 0 and iso-C17 : 0. The G+C content of the DNA was 70.35 mol%. The DNA-DNA relatedness and average nucleotide identity values as well as evolutionary distances based on multilocus (atpD, gyrB, recA, rpoB and trpB) sequences between strain TRM 66233T and closely related type strains were significantly lower than the recommended threshold values. The whole-genome average nucleotide identity and digital DNA-DNA hybridization values between strain TRM 66233T and S. bikiniensis NRRL B-1049T were 78.86 and 23.2 %, respectively. On the basis of evidence from this polyphasic study, strain TRM 66233T should represent a novel species of the genus Streptomyces, for which the name Streptomyces apocyni sp. nov. is proposed. The type strain is TRM 66233T (=CCTCC AA 2019056T=LMG 31559T).
- Research Article
14
- 10.1099/ijsem.0.003461
- Dec 1, 2019
- International Journal of Systematic and Evolutionary Microbiology
Strain 1JSPR-7T, a facultatively anaerobic bacterium isolated from the gut of larvae of Allomyrina dichotoma raised in Wanju-gun, Republic of Korea, was characterized using a polyphasic approach. Comparative analysis of 16S rRNA gene and rpoB gene sequences showed that strain 1JSPR-7T fell within the genus Lactococcus, forming a compact cluster with the type strain of four subspecies of Lactococcus lactis and Lactococcus taiwanensis. The 16S rRNA gene sequence of strain 1JSPR-7T revealed the highest homology with L. lactissubsp. lactis JCM 5805T (97.3 %) and L. lactissubsp. hordniae NBRC 100931T (97.1 %), and the rpoB gene sequence showed the highest similarity to L. lactissubsp. cremoris DSM 20069T (91.4 %) and L. lactissubsp. tructae L105T (91.4 %). The average nucleotide identity and digital DNA-DNA hybridization values indicated that strain 1JSPR-7T was a novel species of the genus Lacococcus. The major fatty acids (>10 % of the total fatty acids) were summed feature 7 (unknown 18.846, C19 : 1ω6c and/or C19 : 0cyclo ω10c), C16 : 0 and C14 : 0, and the predominant menaquinone was MK-8 with MK-7 as a minor one. The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, an unidentified phospholipid and three unidentified glycolipids with diphosphatidylglycerol as the major one. The cell-wall peptidoglycan was of the A4α type with an interpeptide bridge comprising l-Lys-d-Asp. The DNA G+C content based on the whole genome sequences was 37.4 mol%. Based on the data obtained, strain 1JSPR-7T represents a novel species of the genus Lactococcus, for which the name Lactococcusallomyrinae sp. nov. is proposed. The type strain is 1JSPR-7T (=KACC 19319T=NBRC 113068T).
- Research Article
3
- 10.1007/s10482-024-01998-2
- Jul 26, 2024
- Antonie van Leeuwenhoek
A Gram-stain-positive, strictly aerobic, creamy-white colored, endospore-forming and non-motile rods strain, designated as strain 2205SS18-9T, was isolated from a marine sponge, Axinella sp. collected from Seopseom Island, Republic of Korea. Optimal growth of strain 2205SS18-9T was observed at 25-30°C, pH 6.5-7.0, and in the presence of 3.0% (w/v) NaCl. Cells were oxidase-positive and catalase-negative. Negative for nitrate reduction and indole production. Phylogenetic analyses based on the 16S rRNA gene and whole-genome sequences revealed that strain 2205SS18-9T formed a distinct phyletic lineage in the genus Chengkuizengella, and it was most closely related to Chengkuizengella marina YPA3-1-1T and Chengkuizengella sediminis J15A17T with 97.1 and 96.6% 16S rRNA gene sequence similarities, respectively. The average nucleotide identity and digital DNA-DNA hybridization values between strain 2205SS18-9T and Chengkuizengella marina YPA3-1-1T were 79.0 and 21.6%, respectively. The genomic DNA G + C content was 34.1%. The genome harbors a number of host-adhesion and transporter genes, suggested that strain 2205SS18-9T may interact with its sponge host as a symbiont. Menaquinone-7 was the sole isoprenoid quinone and antieiso-C15:0 (28.5%), iso-C16:0 (25.8%), C16:1 ω7c alcohol (15.0%), and iso-C15:0 (11.2%) were detected as the major fatty acids. Polar lipids included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two unidentified aminophospholipids, and an unidentified lipid. The cell-wall peptidoglycan contained lysine, alanine, glutamate, and aspartate. Based on these analyses, strain 2205SS18-9T represents a novel species of the genus Chengkuizengella, for which the name Chengkuizengella axinellae sp. nov. is proposed. The type strain is 2205SS18-9T (= KACC 23238T = LMG 33063T).
- Research Article
- 10.1016/j.syapm.2025.126589
- Mar 1, 2025
- Systematic and applied microbiology
Description and genomic characterization of Mesorhizobium marinum sp. nov., a bacterium isolated from sea sediment.
- Research Article
6
- 10.1007/s10482-021-01574-y
- Apr 12, 2021
- Antonie van Leeuwenhoek
A new bacterium was successfully isolated from a mangrove sediment sample in Haikou City, Hainan Province, China. The organism is a Gram-negative, rod-shaped, non-motile and strictly aerobic bacterium, named NBU-8HK146T. Strain NBU-8HK146T was able to grow at temperatures of 10-40°C, at salinities of 0-11% (w/v) and at pH 5.5-9.5. Veoges-Proskauer, methyl red reaction and hydrolysis of Tween 20 were negative. Catalase and oxidase activities, H2S production, hydrolysis of starch, casein, Tweens 40, 60 and 80 were positive. The major cellular fatty acids were C16:0, iso-C15:0 and summed feature 9. The major respiratory quinone was ubiquinone-8 (Q-8). The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol and two unidentified glycolipids. According to 16S rRNA gene sequence similarities, strain NBU-8HK146T shared 98.0%, 97.9%, 97.7%, 97.6% and 97.3% similarities to the species with validated name Microbulbifer taiwanensis CC-LN1-12T, Microbulbifer rhizosphaerae Cs16bT, Microbulbifer marinus Y215T, Microbulbifer donghaiensis CN85T and Microbulbifer aggregans CCB-MM1T, respectively. Phylogenetic analyses indicated that strain NBU-8HK146T formed a distinct lineage with strains Microbulbifer taiwanensis CC-LN1-12T and Microbulbifer marinus Y215T. Both digital DNA-DNA hybridization values (19.5-22.7%) and average nucleotide identity values (73.2-78.9%) between strain NBU-8HK146T and related species of genus Microbulbifer were below the species delineation cutoffs. The DNA G+C content was 58.9mol%. Many proteins involving in the adaption of osmotic stress in the salt environment of mangrove were predicted in genome of strain NBU-8HK146T. From phenotypic, genotypic, phylogenetic and chemotaxonomic characteristics, strain NBU-8HK146T can be regarded as a new Microbulbifer species for which the name Microbulbifer hainanensis. The type strain is NBU-8HK146T (= KCTC 82226T = MCCC 1K04737T).
- Research Article
7
- 10.1099/ijsem.0.005182
- Jan 19, 2022
- International Journal of Systematic and Evolutionary Microbiology
A Gram-stain positive, strictly aerobic, non-motile and rod-shaped strain, NJ-Z5T, was isolated from a soil sample obtained from the Antarctic Peninsula. This strain was taxonomically characterized by a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain NJ-Z5T belonged to the genus Pseudarthrobacter and showed the highest similarities to Pseudarthrobacter sulfonivorans ALLT (98.07%), followed by Pseudarthrobacter siccitolerans 4J27T (98.00%), Pseudarthrobacter phenanthrenivorans Sphe3T (97.93%) and Pseudarthrobacter psychrotolerans YJ56T (97.82%). The strain was able to grow at 4–28 °C (optimum, 25 °C), at pH 6.0–8.0 (optimum, pH 7.0) and with 0–1.0% (w/v) NaCl (optimum, 0%). It had catalase activity but no oxidase activity. The chemotaxonomic characteristics of strain NJ-Z5T, which had MK-9 (H2) as its predominant menaquinone and anteiso-C15:0 (58.5%), anteiso-C17:0 (9.9%) and iso-C16:0 (7.0%) as its major fatty acids, were consistent with classification in the genus Pseudarthrobacter . The polar lipid profile of strain NJ-Z5T comprised phosphatidylinositol, diphosphatidylglycerol, phosphatidylglycerol, three unidentified glycolipids and two unidentified phospholipids. The genome of strain NJ-Z5T was 4.57 Mbp with a G+C content of 67.1 mol%. Average nucleotide identity (ANI) values between strain NJ-Z5T and other species of the genus Pseudarthrobacter were found to be low (ANIm <86%, ANIb <80% and OrthoANIu <80 %). Furthermore, digital DNA–DNA hybridization (dDDH) and average amino acid identity (AAI) values between strain NJ-Z5T and the closely related species ranged from 22.7 to 24.0% and from 75.5 to 77.2%, respectively. On the basis of its differential physiological properties, chemotaxonomic characteristics and low ANI, dDDH and AAI results, strain NJ-Z5T is considered to represent a novel species within the genus Pseudarthrobacter , for which the name Pseudarthrobacter albicanus sp. nov. is proposed. The type strain is NJ-Z5T (=CGMCC 1.15636T=KCTC 39722T).
- Research Article
8
- 10.1007/s00284-022-02968-5
- Jul 26, 2022
- Current microbiology
A novel Gram-staining-negative, aerobic, rod-shaped, and white-colored bacterium designated as 1NDH52CT was isolated from a tidal flat sediment and its taxonomic position was determined using a polyphasic taxonomic approach. The microorganism was found to grow at 10-37°C, pH 6.0-9.0, and in the presence of 0-2% (w/v) NaCl, and to hydrolyze gelatin and aesculin. The major cellular fatty acid of strain 1NDH52CT was summed feature 8 (C19:1 ω7c and/or C18:1 ω6c); the polar lipids comprised diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, an aminolipid, and a lipid; the respiratory quinone was ubiquinone-10. The 16S rRNA gene-based phylogenetic analysis showed that strain 1NDH52CT was closely related to members of the genus Ruegeria with the identity of 98.2% to the type strain Ruegeria pomeroyi DSM 15711T. The genome DNA G + C content of strain 1NDH52CT was 63.6%. The phylogenomic analysis indicated that strain 1NDH52CT formed an independent branch distinct from reference type strains of species within this genus. Digital DNA-DNA hybridization and average nucleotide identity values between strain 1NDH52CT and reference strains were, respectively, 19.1-41.5% and 78.3-91.3%, which are far below the thresholds of 70% and 95-96% for species definition, respectively, indicating that strain 1NDH52CT represents a novel genospecies of the genus Ruegeria. Based on phenotypic and genotypic data, strain 1NDH52CT is concluded to represent a novel species of the genus Ruegeria, for which the name Ruegeria alba sp. nov., is proposed. The type strain of the species is 1NDH52CT (= GDMCC 1.2382T = KCTC 82664T).
- Research Article
16
- 10.1099/ijsem.0.003088
- Oct 26, 2018
- International Journal of Systematic and Evolutionary Microbiology
Strain SH9T, an aerobic bacterium isolated from a paddy soil sample collected in Shanghai, China, was characterized using a polyphasic approach. It grew optimally at pH 7.0, temperatures of 30-35 °C and in the presence of 1 % (w/v) NaCl. Comparative analysis of 16S rRNA gene sequences showed that strain SH9T fell within the genus Alsobacter, forming a clear cluster with the type strain of Alsobacter metallidurans, with which it exhibited a 16S rRNA gene sequence similarity value of 98.5 %. Cells of strain SH9T were Gram-stain-negative, motile, non-spore-forming, rod-shaped, positive for catalase and oxidase activity, and negative for atmospheric nitrogen fixation and nitrate reduction. The strain was a chemo-organotrophic bacterium, incapable of growth on C1 substrates. The chemotaxonomic properties of strain SH9T were consistent with those of the genus Alsobacter: the predominant ubiquinone was Q-10, and the major fatty acid was summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c). The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine and phosphatidylmonomethylethanolamine. The DNA G+C content was 68.5 mol%. Strain SH9T exhibited a DNA-DNA relatedness level of 20±2 % with A. metallidurans NBRC 107718T. Based on the data obtained, strain SH9T represents a novel species of the genus Alsobacter, for which the name Alsobactersoli sp. nov. is proposed. The type strain is SH9T (=JCM 32501T=CCTCC AB 2017284T). A new family, Alsobacteraceae fam. nov., is also proposed encompassing strain SH9T and Alsobacter metallidurans NBRC 107718T.
- Research Article
- 10.1007/s10482-025-02145-1
- Aug 18, 2025
- Antonie van Leeuwenhoek
A Gram-negative, aerobic, non-motile and rod-shaped bacterial strain, designated DST062T, was isolated from the seawater of Dongshan Bay in Fujian, China. Growth occurred with 0.5-6% (w/v) NaCl (optimum, 3%), at 4-40°C (optimum, 28°C) and at pH 7.0-8.0 (optimum, 7.0), displaying positive reactions for both catalase and oxidase activities. Comparative 16S rRNA gene sequence studies showed that strain DST062T formed a distinct lineage within the family Flavobacteriaceae. It exhibited the highest 16S rRNA gene sequence similarity value to Confluentibacter sediminis DSL-48T (95.35%). This low similarity value enabled clear differentiation of strain DST062T from strains of related genera such as Confluentibacter, Snuella, Jejuia, and Tamlana through 16S rRNA gene sequence analysis. The G + C content of the genomic DNA was 35.92%. The estimated Average Nucleotide Identity and digital DNA-DNA Hybridization values between strain DST062T and the reference species ranged from 73.7 to 76.0% and from 18.5 to 20.0%, respectively. The major fatty acid profile comprised iso-C15:0, summed feature 3 (C16:1ω6c/C16:1ω7c), iso-C15:1 G and iso-C17:0 3-OH. The respiratory quinone was identified as menaquinone 6. The major polar lipids of strain DST062T included two aminolipids phosphatidylethanolamine, and two unknown polar lipids. Based on phylogenetic, chemotaxonomic and genomic analysis, strain DST062T represents a novel species from a novel genus of the family Flavobacteriaceae, for which the name Flavisericumlabens gen. nov. sp. nov. is proposed. The type strain is DST062T (= MCCC 1K08936T = KCTC 102361T).
- Research Article
3
- 10.1007/s10482-021-01665-w
- Sep 25, 2021
- Antonie van Leeuwenhoek
A Gram-negative, rod-shaped, motile and strictly aerobic bacterium, designated NBU1469T, was isolated from marine sediment sampled on Meishan Island located in the East China Sea. Strain NBU1469T grew optimally at temperature of 40°C, NaCl concentration of 2.0% (w/v) and pH 7.5. Catalase and oxidase activities, H2S production, nitrate reduction and hydrolysis of Tween 20 were positive. Indole, methyl red reaction, urease, hydrolysis of gelatin, starch, casein, Tweens 40, 60 and 80 were negative. The major cellular fatty acids were C16:0, C19:0 cyclo ω8c and summed feature 8 (C18:1 ω7c and/or C18:1 ω6c). The only respiratory quinone was ubiquinone-10 (Q-10). The major polar lipids were phosphatidylglycerol, two unidentified amino-phospholipids and two unidentified phospholipids. Comparative analysis of the 16S rRNA gene sequence showed highest similarities to the species with validated name Nisaea nitritireducens DR41_18T (98.1%) and Nisaea denitrificans DR41_21T (97.6%). Phylogenetic analyses indicated that strain NBU1469T formed a distinct lineage with strains Nisaea nitritireducens DR41_18T and Nisaea denitrificans DR41_21T within the genus Nisaea. The average nucleotide identity and digital DNA-DNA hybridization values between strain NBU1469T and related species of genus Nisaea were well below the threshold limit for prokaryotic species delineation. The DNA G + C content was 63.6%. Based on its phenotypic, chemotaxonomic and genotypic data, strain NBU1469T is considered to be a representative of a novel species in the genus Nisaea, for which the name Nisaea sediminum sp. nov. is proposed. The type strain is NBU1469T (=KCTC 82224T =MCCC 1K04763T).
- Ask R Discovery
- Chat PDF
AI summaries and top papers from 250M+ research sources.