Linking flow attributes to recruitment to inform water management for an Australian freshwater fish with an equilibrium life-history strategy

Both theory and empirical evidence identify flow regime as a primary factor driving the structure of riverine fish communities and spatial patterns of species invasions. We used long-term fish community monitoring data to evaluate hypothesized responses to interannual variability in flow attributes across seven rivers in the American Southwest. We asked the following three questions: (1) Can annual variation in species abundances be explained by attributes that represent flow seasonality, variability, and consistency? (2) Can species responses be predicted based on their origin (native versus nonnative) or life-history strategy? and (3) Are species responses to variation in specific flow attributes consistent across river systems with modified and natural flow regimes? We found that species responses to flow attributes were best predicted by origin, suggesting responses to flows are associated with adaptations to regional hydrologic variability. Additionally, most species responded negatively to increased flow variability, particularly in systems with an altered flow regime. Our findings demonstrate site- and taxa-specific responses to flows that can guide conservation of fishes in lotic systems of the American Southwest and elsewhere.

Key environmental factors determining life history strategies of river fishes and their historical changes in the Yangtze River

Genetic variation is critical to the persistence of populations and their capacity to adapt to environmental change. The distribution of genetic variation across a species' range can reveal critical information that is not necessarily represented in species occurrence or abundance patterns. We identified environmental factors associated with the amount of intraspecific, individual-based genetic variation across the range of a widespread freshwater fish species, the Murray cod Maccullochella peelii. We used two different approaches to statistically quantify the relative importance of predictor variables, allowing for nonlinear relationships: a random forest model and a Bayesian approach. The latter also accounted for population history. Both approaches identified associations between homozygosity by locus and both disturbance to the natural flow regime and mean annual flow. Homozygosity by locus was negatively associated with disturbance to the natural flow regime, suggesting that river reaches with more disturbed flow regimes may support larger, more genetically diverse populations. Our findings are consistent with the hypothesis that artificially induced perennial flows in regulated channels may provide greater and more consistent habitat and reduce the frequency of population bottlenecks that can occur frequently under the highly variable and unpredictable natural flow regime of the system. Although extensive river regulation across eastern Australia has not had an overall positive effect on Murray cod numbers over the past century, regulation may not represent the primary threat to Murray cod survival. Instead, pressures other than flow regulation may be more critical to the persistence of Murray cod (for example, reduced frequency of large floods, overfishing and chemical pollution).

Natural flow regimes represent the hydrologic conditions to which native aquatic organisms are best adapted. We completed a regional river classification and quantitative descriptions of each natural flow regime for the Ozark–Ouachita Interior Highlands region of Arkansas, Missouri and Oklahoma. On the basis of daily flow records from 64 reference streams, seven natural flow regimes were identified with mixture model cluster analysis: Groundwater Stable, Groundwater, Groundwater Flashy, Perennial Runoff, Runoff Flashy, Intermittent Runoff and Intermittent Flashy. Sets of flow metrics were selected that best quantified nine ecologically important components of these natural flow regimes. An uncertainty analysis was performed to avoid selecting metrics strongly affected by measurement uncertainty that can result from short periods of record. Measurement uncertainties (bias, precision and accuracy) were assessed for 170 commonly used flow metrics. The ranges of variability expected for select flow metrics under natural conditions were quantified for each flow regime to provide a reference for future assessments of hydrologic alteration. A random forest model was used to predict the natural flow regimes of all stream segments in the study area based on climate and catchment characteristics, and a map was produced. The geographic distribution of flow regimes suggested distinct ecohydrological regions that may be useful for conservation planning. This project provides a hydrologic foundation for future examination of flow–ecology relationships in the region. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

Understanding how and why the size of populations varies is critical knowledge for conservation and management. While considerable work has explored how different demographic parameters affect population growth, less is known the drivers of variability in these parameters. Long-term time series tracking population size that are coupled with empirical data to examine the relative importance of different drivers are rare, especially in freshwater systems. Even rarer are studies that collect this information concurrently from multiple species with contrasting life history strategies in the same system to assess whether population size and the relative importance of drivers also vary. We studied changes in the abundance and size structure of four native freshwater fish species in the Murray River, southeastern Australia, over a continuous 19-yr period. Two species with traits typical of "equilibrium" species (Murray cod Maccullochella peelii and trout cod Maccullochella macquariensis) and two with traits of "periodic" species (golden perch Macquaria ambigua and silver perch Bidyanus bidyanus) were sampled annually and capture-mark-recapture modeling was used to ask (1) how did population size change during this period, (2) how were changes in population size related to variability in hydrology, and (3) how were changes in population size driven by different processes (local recruitment or migration events)? Populations of all four species varied throughout the study, and our results are consistent with the notion that local recruitment is an important driver of this variability for Murray cod and trout cod, whereas immigration is more important for the two other species. Increases in spring river discharge strongly influenced these responses for trout cod and golden perch. Our study provides fundamental insights into the population dynamics of these valued species, and how management strategies might differ based on their life histories. Management should focus on allowing connectivity for golden and silver perch, and on promoting local scale recruitment and survival for Murray cod and trout cod. More generally, our study highlights the importance of understanding the processes underpinning population persistence, how these processes may vary for different species, and ultimately how this knowledge can inform targeted management actions.

The effects of cold water releases, as a by-product of storing irrigation water in large dams, has been a source of great concern for its impact on native freshwater fish for some time. The Mitta Mitta River, northeast Victoria, is impacted by altered thermal regimes downstream of the fourth largest dam in Australia, Dartmouth dam, with some daily temperatures 10–12°C below normal. Murray cod (Maccullochella peelii peelii) were endemic to the Mitta Mitta River; however, resident Murray cod have not been found in this river since 1992. The response of eggs and hatched larvae from Murray cod to different temperature gradients of water were measured and the post-spawning survival recorded. As a case study, post-spawning survival was then inferred from flow data for each year of operation of Dartmouth Dam, recorded since first operation in 1978, and included in a stochastic population model to explore the impact of the altered (historical) thermal regime on population viability. Experimental results revealed no egg and larval survival below 13°C and predicted historical temperature regimes point to more than 15 years of low temperatures in the Mitta Mitta River. Population modelling indicates that the impact of cold water releases on post-spawning survival is a significant threatening process to the viability of a Murray cod population. Additionally, we consider changes to the thermal regime to explore how the thermal impact of large dams may be minimized on downstream fish populations through incrementally increasing the temperature of the releases. The modelled Murray cod population responds to minor increases in the thermal regime; however, threats are not completely removed until an increase of at least 5–6°C. Copyright © 2005 John Wiley & Sons, Ltd.

Ecology and detection of harmful freshwater fish ciliate parasites Chilodonella spp. in aquaculture

ABSTRACTAim A regional analysis was used to explore the influence of river regulation on the dominance of non‐native, invasive shrubs and trees. We addressed the following questions: (1) How do large dams affect hydrological parameters that influence riparian vegetation? (2) How do flow regimes affect the dominance of non‐native woody species? (3) How do changes in flow regimes affect the dominance of non‐native woody species?Location South‐western USA.Methods We sampled the canopy cover of woody species on 179 point bars along seven non‐dammed and thirteen dammed river segments. Wilcoxon rank sum tests were used to determine differences between flow parameters in dammed and non‐dammed rivers. We used correlation analyses and generalized linear model comparisons to examine associations of flow parameters and canopy cover of native (Populus and Salix) and non‐native (Tamarix and Elaeagnus) taxa. An index of flow alteration that was created using principal components analysis was regressed with vegetation cover.Results Tamarix cover was positively related to drainage area, flow constancy, August and May median flow and flow recession rate, but Elaeagnus cover was unrelated to flow variables. River segments with peak flows in late summer or high constancy had the highest Tamarix cover. Populus cover was positively influenced by low maximum temperatures and frequent high pulses. Flow alteration was negatively related to Populus cover and positively related to Tamarix cover. Total non‐native, Elaeagnus and Salix covers were not correlated with flow alteration.Main conclusions Rivers with a large drainage area and low flow variability are inherently more vulnerable to invasions. River regulation does not necessarily increase the cover of non‐native, invasive species. Instead, changes in flow allow proliferation of species that have life‐history traits suited to modified flow regimes. River restoration projects that aim to reinstate natural flow regimes should be designed with knowledge of native and non‐native species' life history strategies.

Freshwater mussels (Order: Unionida) and fishes are two imperiled taxa that make up an important part of global freshwater biodiversity. Mussels exhibit a complex life cycle that can contribute to their imperilment. Most mussels parasitize a host fish during their larval stage to reach maturity, making host fishes and the mussels that they support coevolved taxa thus mussel diversity and distribution can correspond to that of fishes. The Host-Habitat Continuum Concept (HHCC) seeks to explain mussel distribution by combining life history theory, host fish distributions, and stream ecological gradients. The HHCC predicts increases in fish and mussel species richness, shifts in mussel life history strategy and fish family composition as habitat area, complexity, and stability increase with stream size. Here, we combined observational data on fish and mussel assemblages from seven mussel bed reaches with published mussel and host fish relationships and mussel life history traits to evaluate if HHCC explains mussel and fish distribution. We found weak support for HHCC as fish and mussel species richness, increased with watershed area, but only mussel densities were positively related to watershed. The relationship between fish densities and watershed area was seasonally dependent, showing no relationship in summer when stream discharge was greater and a negative relationship in autumn when stream discharge was lower. Centrarchids (sunfish) and leuciscids (minnows) were the most abundant fishes among sites, equilibrium life history strategies and luring host infestation strategies dominated mussels assemblages, but there was no longitudinal change in proportional abundances of fish families, mussel life history or infestation strategies as expected. There was a high degree of host partitioning among coexisting mussels, but we found no relationship between known host fish occurrences and mussel occurrences. The complex nature of freshwater systems and biological interactions between species likely influenced our ability to detect strong associations. Strong host fish partitioning among mussels at sites distributed along a stream size gradient indicates that management aimed at protecting interactions between fishes and mussels may be valuable for conserving these codependent taxa.

Living under stressful conditions: Fish life history strategies across environmental gradients in estuaries

Fish assemblages in dryland rivers have life‐history strategies that have evolved in response to environmental conditions and triggers, particularly water temperatures and flow regimes. The regulation of rivers through the construction of dams, weirs and other water diversion structures has altered natural flow regimes and the associated ecological processes of river systems worldwide. Over a 3‐year period, using standardized fish sampling and daily otolith ageing, the recruitment of eight freshwater fish species was monitored in response to various abiotic drivers, including hydrology and water temperatures, throughout the Macquarie River, a large regulated river system of the Australian Murray‐Darling Basin. A data‐driven statistical classification system is provided that groups species into reproductive guilds, based on their recruitment response to hydrology and water temperature, specifically designed for use in environmental flow management. The eight species were grouped into three distinct reproductive guilds that showed similar recruitment responses to the abiotic drivers. Murray‐Darling rainbowfish, Murray cod, and eel‐tailed catfish were considered as a single guild, characterized by seasonal recruitment during a relatively narrow thermal window under low to moderate stable discharges. The second group included common carp, bony herring, and golden perch, which recruited primarily in association with larger flow events. Un‐specked hardyhead and Australian smelt formed a more differentiated guild, recruiting over a broad range of temperatures and discharges. Limitations associated with using a reproductive guild approach to simplify water management are discussed. This study highlighted important relationships among hydrology, water temperatures, and successful recruitment that can, in turn, be used to inform development of adaptive flow management plans and effective use of environmental water for the conservation management of native fish communities. Important considerations in the design of studies that aim to examine relationships between recruitment and abiotic drivers are also discussed.

Life history strategies predict responses of lacustrine fish communities to eutrophication

Context Dryland rivers are unique ecosystems, where drought and flood play an important role in shaping the ecosystem. River regulation has altered the natural flow regime in many of these systems, affecting migration cues and connectivity for many species. Aims To quantify the discharge-related movements of Murray cod and golden perch within the Condamine–Balonne River subject to differing levels of river regulation. Methods We quantified flow regime variability, river regulation and fish movement to develop generalised additive mixed models to predict movement probability for Murray cod and golden perch. Results Both species showed strong positive relationships between discharge and movement. Murray cod did not show any association with river regulation; however, medium-sized individuals were significantly more likely to move than were smaller or larger fish. Golden perch movements varied among levels of regulation, were more likely to move as body weight increased and showed seasonality of movement, moving less during winter. Conclusions This study presents the largely unobserved movement behaviours of fish across a gradient of river regulation and environmental conditions in the northern Murray–Darling Basin. Implications This information is valuable for informing policy and management decisions that may affect species’ life-history requirements in analogous river systems.

Novel climates in European river sub-basins pose a challenge for the persistence of freshwater fish

Persistent hypoxic or low-oxygen conditions in aquatic systems are becoming more frequent worldwide, causing large-scale mortalities to aquatic fauna. It is poorly understood, however, whether species can acclimate to long-term hypoxic conditions. In two experiments, we exposed juvenile freshwater fish (Murray cod, Maccullochella peelii) to low-oxygen conditions and investigated acclimation effects. Experiment 1 determined how responses could be modified by exposure to different temperatures (20, 24 and 28°C) and oxygen conditions (control 6-8 mgO2 L-1 and low-oxygen 3-4 mgO2 L-1) over 30days. Experiment 2 determined the acclimation ability of fish exposed to two temperatures (20 and 28°C) and low-oxygen conditions (3-4 mgO2 L-1) for three different acclimation periods (7, 14 and 30days). Responses were measured by determining critical oxygen tension (P crit), loss of equilibrium and aerobic capacity using resting respirometry. In experiment 1, resting oxygen requirements were negatively affected by long-term low-oxygen exposure except at the highest temperature (28°C). However, long-term acclimation in low-oxygen improved tolerance as measured by loss of equilibrium but not P crit. In experiment 2, fish could tolerate lower oxygen levels before reaching loss of equilibrium after 7days acclimation, but this declined overtime. Murray cod were most tolerant to low-oxygen at the lowest temperature (20°C) and shortest exposure time (7days). Extended low-oxygen exposure resulted in reduced aerobic capacity of fish particularly at the lowest temperature. While prior exposure to low-oxygen may allow fish to cope with hypoxic conditions better in the long-term, acclimation time was inversely related to tolerance, suggesting that resistance to hypoxia might decrease as a function of exposure time. Our study fills a much-needed gap in our understanding of how freshwater species acclimate to hypoxia, and in particular, how exposure to prolonged periods of low-oxygen and elevated temperatures affect organisms physiologically.