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Interpreting the structure of Gailiūnai 2 and Varėnė 2: Two different cases of Late Mesolithic campsite organisation in southeast Lithuania

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This study examines the intra-site structure of two Late Mesolithic sites in southeast Lithuania: Gailiūnai 2 and Varėnė 2. Gailiūnai 2 presents a rare example of a single-period camp with a well-preserved spatial structure of discrete lithic scatters. In contrast, Varėnė 2 is a multi-period palimpsest site with mixed archaeological deposits but with documented Mesolithic features. Spatial analysis, characterisation and refitting of lithic artefacts as well as AMS 14C dating were carried out in order to identify the patterns in the internal organisation of both sites and define the nature of activities that resulted in the formation of their particular structure. The analyses have shown that three discrete lithic clusters at Gailiūnai 2 likely reflect remains of short-term task-specific encampments with the western cluster also displaying evidence of a surface dwelling. Refitting revealed prevalence of short reduction sequences and a technological organisation indicative of short-term stays. Varėnė 2 represents repeated, more substantial occupations involving habitation inside dugout dwellings as well as potential reuse of their pits as dumps. While individual lithic scatters are impossible to distinguish, three dugout structures with artefact-rich fills indicate more substantial habitation for longer periods. Radiocarbon dating has shown that dugouts were probably used between ca. 7170 and 4800 cal BC and in separate phases. The Late Mesolithic habitation at Varėnė 2 involved extensive usage of distinctive reddish-banded flint, which was used contemporaneously with the inhabitation and burial at one of the dugouts. The contrasting site structures highlight variability in Late Mesolithic settlement strategies. These results demonstrate the potential of unstratified sandy sites to reveal meaningful insights into lifeways of Stone Age hunter-gatherers in the southeast Baltic.

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  • Nov 14, 2018
  • Gytis Piličiauskas

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  • Cite Count Icon 30
  • 10.1007/s00334-019-00745-2
New evidence on the southeast Baltic Late Bronze Age agrarian intensification and the earliest AMS dates of Lens culinaris and Vicia faba
  • Aug 14, 2019
  • Vegetation History and Archaeobotany
  • Karolis Minkevičius + 4 more

This article explores the Late Bronze Age agrarian intensification in the south-east Baltic. In recent years several studies have illustrated that to date there is no solid evidence on Neolithic farming and that the agricultural history of the region was probably distinctly different in comparison to other parts of northern Europe. The recently excavated Kukuliskiai settlement (887–406 cal bc) in coastal Lithuania provides new data, which contribute to the discussion on the development of early farming in the south-east Baltic. Archaeobotanical analysis revealed that local Late Bronze Age communities cultivated a wide range of cereals and pulses, with consumption of wild plants being of minor importance. We also report the earliest finds of Lens culinaris in the region and the earliest AMS 14C dates on grains of Vicia faba and Avena sp. The composition of botanical assemblages also has some indications of manuring and landscape maintenance, presenting a possibility of permanent fields. Finally, we suggest that adoption and intensification of farming alongside other social, economic and technological innovations could have reached the region from the Nordic and Lusatian cultures via the Baltic Sea communication network.

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  • Cite Count Icon 45
  • 10.1016/j.jhevol.2006.11.006
The Pech-de-l'Azé I Neandertal child: ESR, uranium-series, and AMS 14C dating of its MTA type B context
  • Dec 10, 2006
  • Journal of Human Evolution
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The Pech-de-l'Azé I Neandertal child: ESR, uranium-series, and AMS 14C dating of its MTA type B context

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Abstract PS3-12-21: A Novel Spatial Profiling Approach Reveals Distinct Fibroblast and Immune Architectures in Invasive Pleomorphic versus Classic Lobular Carcinomas
  • Feb 17, 2026
  • Clinical Cancer Research
  • E N Barrientos-Toro + 7 more

Background Invasive Lobular carcinomas (ILC) comprise a histologically and biologically diverse group of breast cancers. While classic invasive lobular carcinomas (ICLCs) are typically characterized by cohesive, infiltrative growth and immune-excluded microenvironments, pleomorphic invasive lobular carcinomas (IPLCs) display more aggressive behavior. Based on our previous findings of differential CAF cell densities in five phenotypes between CLCs and PLCs, we aimed to investigate the spatial relationships and distribution patterns within these phenotypes, as the spatial organization of fibroblasts and immune cells in these histologic subtypes remains underexplored. Methods We performed high-dimensional multiplex immunofluorescence (mIF) spatial analysis on 12 cases of ILC (IPLCs: cases 7–12; ICLCs: cases 13–18). A comprehensive fibroblast-focused panel (including FAP, S100A4, Thy1, A-SMA) and immune markers (CD45) were used to characterize tumor (CK+), fibroblast, and immune compartments. Spatial clustering and neighborhood analysis were conducted using the Spatial Image Analysis of Tissues (SPIAT) R package v 4.5.1, to define the microenvironmental architecture. Results IPLCs demonstrated marked spatial heterogeneity, with fragmented CK+ tumor regions interspersed among stromal and immune elements. Fibroblast landscapes in IPLCs were notably diverse, featuring abundant hybrid subtypes (e.g., S100+Thy1+, A-SMA+FAP+) and frequent tumor-stroma integration within shared neighborhoods. These dynamic fibroblast populations supported active extracellular matrix (ECM) remodeling, potentially facilitating invasion and contributing to partial immune engagement. CD45+ immune cells were consistently more prominent in IPLCs, forming discrete immune-enriched clusters and mixed neighborhoods, suggesting an immune-intermediate or partially inflamed phenotype. In contrast, ICLCs displayed large, cohesive CK+ tumor regions with minimal fragmentation and low spatial heterogeneity. Fibroblast subtypes were simpler and predominantly peripherally distributed, and they rarely formed hybrid phenotypes. The stroma primarily acted as structural support, with limited ECM remodeling and minimal immune modulation. CD45+ cells were sparse and diffusely scattered, consistent with an immune-excluded (“cold”) microenvironment. Conclusions While descriptive, our data reveal profound differences in the spatial microenvironments of IPLC and ICLCs. IPLCs exhibit a dynamic, heterogeneous stroma characterized by integrated fibroblast-tumor interactions and increased immune infiltration, aligning with their aggressive clinical behavior. In contrast, ICLCs maintain a cohesive tumor architecture with simplified, peripheral stroma and sparse immune presence. These insights highlight the significance of spatial context as an innovative and informative strategy in comprehending ILC biology and suggest that stromal and immune features may inform therapeutic strategies, including potential vulnerability to stroma- or immune-targeted interventions in IPLCs Citation Format: E. N. Barrientos-Toro, R. Pandurengan, H. Batra, Q. Ding, A. Contreras, A. A. Sahin, C. Haymaker, M. G. Raso. A Novel Spatial Profiling Approach Reveals Distinct Fibroblast and Immune Architectures in Invasive Pleomorphic versus Classic Lobular Carcinomas [abstract]. In: Proceedings of the San Antonio Breast Cancer Symposium 2025; 2025 Dec 9-12; San Antonio, TX. Philadelphia (PA): AACR; Clin Cancer Res 2026;32(4 Suppl):Abstract nr PS3-12-21.

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  • Cite Count Icon 3
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  • Dec 20, 2019
  • Archaeologia Lituana
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  • Apr 25, 2023
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  • Cite Count Icon 32
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  • Dec 1, 2018
  • The Journal of the Acoustical Society of America
  • Timothy K Stanton + 2 more

When a beam emitted from an active monostatic sensor system sweeps across a volume, the echoes from scatterers present will fluctuate from ping to ping due to various interference phenomena and statistical processes. Observations of these fluctuations can be used, in combination with models, to infer properties of the scatterers such as numerical density. Modeling the fluctuations can also help predict system performance and associated uncertainties in expected echoes. This tutorial focuses on "physics-based statistics," which is a predictive form of modeling the fluctuations. The modeling is based principally on the physics of the scattering by individual scatterers, addition of echoes from randomized multiple scatterers, system effects involving the beampattern and signal type, and signal theory including matched filter processing. Some consideration is also given to environment-specific effects such as the presence of boundaries and heterogeneities in the medium. Although the modeling was inspired by applications of sonar in the field of underwater acoustics, the material is presented in a general form, and involving only scalar fields. Therefore, it is broadly applicable to other areas such as medical ultrasound, non-destructive acoustic testing, in-air acoustics, as well as radar and lasers.

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  • Kaoru Miura Kaoru Miura + 1 more

We calculated the electronic structures of ferroelectric PbTiO3 using the discrete variational Xα cluster method. From our investigation of the π bond between the titanium ion and the oxygen ion, we found that the role of lead ions is to bring about a spatial change in the oxygen 2p orbital by covalent interaction between oxygen 2p and lead 6s orbitals. This change favours titanium ion displacement. Moreover, from the investigation of the σ bond, we found that the role of the Madelung potential is to cause the spatial changes in the titanium orbitals; the long-range Coulomb interaction causes a stronger σ bond. We conclude that the origins of ferroelectricity in PbTiO3 are (i) the spatial change in the oxygen 2p orbital due to covalent interaction between oxygen 2p and lead 6s orbitals and (ii) the spatial changes in the titanium orbitals due to the Madelung potential.

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  • Cite Count Icon 16
  • 10.1016/j.ijpharm.2022.122191
High spatial resolution ToF-SIMS imaging and image analysis strategies to monitor and quantify early phase separation in amorphous solid dispersions
  • Sep 30, 2022
  • International Journal of Pharmaceutics
  • Eleonora Paladino + 7 more

Amorphous solid dispersions (ASDs) are formulations with enhanced drug solubility and dissolution rate compared to their crystalline counterparts, however, they can be inherently thermodynamically unstable. This can lead to amorphous phase separation and drug re-crystallisation, phenomena that are typically faster and more dominant at the product’s surfaces. This study investigates the use of high-resolution time of flight-secondary ion mass spectrometry (ToF-SIMS) imaging as a surface analysis technique combined with image-analysis for the early detection, monitoring and quantification of surface amorphous phase separation in ASDs. Its capabilities are demonstrated for two pharmaceutically relevant ASD systems with distinct re-crystallisation behaviours, prepared using hot melt extrusion (HME) followed by pelletisation or grinding: (1) paracetamol-hydroxypropyl methylcellulose (PCM-HPMC) pellets with drug loadings of 10%–50% w/w and (2) indomethacin-polyvinylpyrrolidone (IND-PVP) ground material with drug loadings of 20%–85% w/w. PCM-HPMC pellets showed intense phase separation, reaching 100% PCM surface coverage within 1–5 months. In direct comparison, IND-PVP HME ground material was more stable with only a moderate formation of isolated IND-rich clusters. Image analysis allowed the reliable detection and quantification of local drug-rich clusters. An Avrami model was applied to determine and compare phase separation kinetics. The combination of chemical sensitivity and high spatial resolution afforded by SIMS was crucial to enable the study of early phase separation and re-crystallisation at the surface. Compared with traditional methods used to detect crystalline material, such as XRPD, we show that ToF-SIMS enabled detection of surface physical instability already at early stages of drug cluster formation in the first days of storage.

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  • Cite Count Icon 24
  • 10.1109/tgrs.2019.2945370
Individual Scatterer Model Learning for Satellite Interferometry
  • Nov 1, 2019
  • IEEE Transactions on Geoscience and Remote Sensing
  • Bas Van De Kerkhof + 4 more

Satellite-based persistent scatterer satellite radar interferometry facilitates the monitoring of deformations of the earth's surface and objects on it. A challenge in data acquisition is the handling of large numbers of coherent radar scatterers. The behavior of each scatterer is time dependent and is influenced by changes in deformation and other phenomena. Built environments are especially challenging since scatterers may have different signal qualities and deformations may vary significantly among objects. Thus, the estimation of the actual deformation requires a functional model and a stochastic model, both of which are typically unknown per scatterer and observation. Here, we present an approach that models the deformation behavior for each individual scatterer. Our technique is applied in a postprocessing phase following the state-of-the-art interferometric processing of persistent scatterers. This addition significantly improves the interpretation of large data sets by separating the relevant phenomena classes more efficiently. It leverages more information than other methods from individual scatterers, which enhances the quality of the estimation and reduces residuals. Our evaluation shows that this technique can discriminate objects in terms of similar deformation characteristics that are independent of the specific spatial position and temporal complexity. Future applications analyzing large data sets collected by satellite radars will, therefore, drastically benefit from this new capability of extracting categorized types of time series behavior. This contribution will augment traditional spatial and temporal analysis and improve the quality of time-dependent deformation assessments.

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  • Cite Count Icon 6
  • 10.2218/jls.6695
Use-wear and residue analysis of knapped stone artefacts from Lepenski Vir and Padina (Serbia)
  • Dec 15, 2021
  • Journal of Lithic Studies
  • Anđa Petrović + 3 more

Following a series of published analyses ranging from architecture to prehistoric diet of the Iron Gates’ inhabitants, our research aims to present new results regarding use-wear analysis of knapped stone artefacts from Lepenski Vir and Padina with a particular focus on the transition from Mesolithic to Neolithic in this region. Use-wear and residue analysis are applied using the low and high-power approach by Optical Light Microscope (OLM) observations combined with FTIR analysis. Based on the results, some of the main activities that took place in Iron Gates are processing of hide, bone, antler, plants, and soft stone. It is very important to highlight the complexity of various processes, which make this already specific area more peculiar. A variety of both simple, but overall, more complex and composite activities are recorded with the elaborate preparation of the used materials, for example, hide. Particular processes, such as butchering, were noted both inside the houses, and also concentrated in precise, specific areas of the settlements, where only tools involved in the processing of hide and meat were found. The data obtained highlight the activities of these advanced hunter-gatherer-fishermen and first farmers communities. Together with spatial analysis, the dynamics and processes in the Late Mesolithic and Early Neolithic are revealed, but also many questions regarding the specialization of the prehistoric settlements on the Danube are posed.

  • Research Article
  • Cite Count Icon 3
  • 10.1101/2025.04.02.646782
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  • Apr 8, 2025
  • bioRxiv
  • Fang Liu + 9 more

Background:Multiplexed tissue imaging enables the simultaneous detection of dozens of proteins at single-cell resolution, providing unprecedented insights into tissue organization and disease microenvironments. However, the resulting high-dimensional, gigabyte-scale datasets pose significant computational and methodological challenges. Existing analytical workflows, often fragmented between bespoke scripts and static visualizations, lack the scalability and user-friendly interfaces required for efficient, reproducible analysis. To overcome these limitations, we developed SPAC (analysis of SPAtial single-Cell datasets), a scalable, web-based ecosystem that integrates modular pipelines, high-performance computing (HPC) connectivity, and interactive visualization to democratize end-to-end single-cell spatial analysis applied to cellular positional data and protein expression levels.Results:SPAC is built on a modular, layered architecture that leverages community-based and newly developed tools for single-cell and spatial proteomics analysis. A specialized Python package extends these functionalities with custom analysis routines and established software engineering practices. An Interactive Analysis Layer provides web-hosted pipelines for configuring and executing complex workflows, and scalability enhancements that support distributed or parallel execution on GPU-enabled clusters. A Real-Time Visualization Layer delivers dynamic dashboards for immediate data exploration and sharing. As a showcase of its capabilities, SPAC was applied to a 4T1 breast cancer model, analyzing a multiplex imaging dataset comprising 2.6 million cells. GPU acceleration reduced unsupervised clustering runtimes from several hours to under ten minutes, and real-time visualization enabled detailed spatial characterization of tumor subregions.Conclusions:SPAC effectively overcomes key challenges in spatial single-cell analysis by streamlining high-throughput data processing and spatial profiling within an accessible and scalable framework. Its robust architecture, interactive interface and ease of access have the potential to accelerate biomedical research and clinical applications by converting complex imaging data into actionable biological and clinical insights.

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