Integrative insights into benzo[a]pyrene degradation mechanisms by Aspergillus fumigatus Z5: Spectroscopic, transcriptomic, and computational biological analyses.

The capacity of Fusarium sp. strain ZH-H2 to secret lignin peroxidase (LiP), laccase (Lac), and manganese peroxidase (MnP) and degrade high molecular weight polycyclic aromatic hydrocarbons (HMW-PAHs) was studied. When the fungus was grown in control mineral salt medium for 4days, LiP and Lac activities were detected at 8871UL-1 and 5123UL-1, respectively. In the presence of HMW-PAHs as the sole carbon source, only LiP activity was detectable, and LiP activity had significantly reduced HMW-PAHs at day 7, with a maximum decrease of 85.9%. A strong correlation between LiP activity and HMW-PAHs removal efficiency could be fit into various models, with the highest correlation coefficients obtained for quadratic functions (P < 0.01). When a specific enzyme inhibitor was added, the ability of Fusarium to remove HMW-PAHs was reduced from 85.9 to 66.7%, depending on the inhibitor's concentration. Meanwhile, the determined activity of LiP was reduced from 11.4 to 48.6%. We conclude that in the presence of HMW-PAHs as the only carbon source to support growth, Fusarium ZH-H2 mainly produces LiP but not Lac or MnP for HMW-PAHs degradation. To our knowledge, it was the first time to propose a metabolic lignin peroxidase characterization of HMW-PAHs degradation by Fusarium sp. strains.

Introduction: Migration and mobilization of recalcitrant organic contaminants such as polycyclic aromatic hydrocarbons (PAHs) in contaminated sites may endanger groundwater resources if considerable amounts of these compounds are mobilized and leached from solid phase into aqueous phase. The aim of the present study was to investigate the influence of biochar in two forms i.e. crushed and pulverized on immobilization and leaching behavior of high molecular weight (HMW) PAHs from contaminated soil into water as well as evaluation of contribution of dissolved organic carbon (DOC) in mobilization and release of HMW PAHs in crushed and pulverized biochar-amended soil, which was addressed for the first time in this study. Materials and Methods: Column leaching test was used to evaluate the leaching behavior of selected HMW PAHs from soil. Concentrations of PAHs in column leachates were determined using a GC/MS. Results: Findings showed strong sorption of the studied HMW PAHs to solid phase in both unamended and amended columns. Dibenz[a,h]anthracenewas not mobilized by water flow in any of the examined treatments and showed the greatest affinity to solid matrix. Mobility and leaching of most HMW PAHs were enhanced in the presence of crushed biochar. Direct correlation between detected concentrations of HMW PAHs in column percolates and DOC was found in biochar-amended soil. Conclusions: Biochar can be used as a promising cost-effective alternative to activated carbon in immobilization of PAHs in contaminated sites. However, contribution of DOC in mobilization of HMW PAHs from contaminated soils towards groundwater resources cannot be neglected.

Biological treatment methods are effective at destroying polycyclic aromatic hydrocarbons (PAHs), and some of the highest rates of PAH degradation have been achieved using two-phase-partitioning bioreactors (TPPBs). TPPBs consist of a cell-containing aqueous phase and a biocompatible and immiscible organic phase that partitions toxic and/or recalcitrant substrates to the cells based on their metabolic demand and on maintaining the thermodynamic equilibrium of the system. In this study, the degradation of a 5-component mixture of high and low molecular weight PAHs by a defined microbial consortium of Sphingomonas aromaticivorans B0695 and Sphingomonas paucimobilis EPA505 in a TPPB was examined. The extremely low aqueous solubilities of the high molecular weight (HMW) PAHs significantly reduce their bioavailability to cells, not only in the environment, but in TPPBs as well. That is, in the two-phase system, the originally selected solvent, dodecane, was found to sequester the HMW PAHs from the cells in the aqueous phase due to the inherent high solubility of the hydrophobic compounds in this solvent. To circumvent this limitation, the initial PAH concentrations in dodecane were increased to sufficient levels in the aqueous phase to support degradation: LMW PAHs (naphthalene, phenanthrene) and fluoranthene were degraded completely in 8 h, while the HMW PAHs, pyrene and benzo[a]pyrene, were degraded by 64% and 11%, at rates of 42.9 mg l(-1) d(-1) and 7.5 mg l(-1) d(-1), respectively. Silicone oil has superior PAH partitioning abilities compared to dodecane for the HMW PAHs, and was used to improve the extent of degradation for the PAH mixture. Although silicone oil increased the bioavailability of the HMW PAHs and greater extents of biodegradation were observed, the rates of degradation were lower than that obtained in the TPPB employing dodecane.

To characterize some polycyclic aromatic hydrocarbons (PAH)-degrading microorganisms isolated from an enriched consortium degrading high molecular weight (HMW) PAHs in a two-liquid-phase (TLP) soil slurry bioreactor, and to determine the effect of low molecular weight (LMW) PAH on their growth and HMW PAH-degrading activity. Several microorganisms were isolated from a HMW-PAH (pyrene, chrysene, benzo[a]pyrene and perylene) degrading consortium enriched in TLP cultures using silicone oil as the organic phase. From 16S rRNA analysis, four isolates were identified as Mycobacterium gilvum B1 (99% identity),Bacillus pumilus B44 (99% identity), Microbacterium esteraromaticum B21 (98% identity), and to the genus Porphyrobacter B51 (96% identity). The two latter isolates have not previously been associated with PAH degradation. Isolate B51 grew strongly in the interfacial fraction in the presence of naphthalene vapours and phenanthrene compared with cultures without LMW PAHs. Benzo[a]pyrene was degraded in cultures containing a HMW PAH mixture but pyrene had no effect on its degradation. The growth of isolates B1 and B21 was improved in the aqueous phase than in the interfacial fraction for cultures with naphthalene vapours. Pyrene was required for benzo[a]pyrene degradation by isolate B1. For isolate B21, pyrene and chrysene were degraded only in cultures without naphthalene vapours. Consortium enriched in a TLP culture is composed of microorganisms with different abilities to grow at the interface or in the aqueous phase according to the culture conditions and the PAH that are present. Naphthalene vapours increased the growth of the microorganisms in TLP cultures but did not stimulate the HMW PAH degradation. New HMW PAH-degrading microorganisms and a better understanding of the mechanisms involved in HMW PAH degradation in TLP cultures.

Oxidation of polycyclic aromatic hydrocarbons (PAH) by the white rot fungus, Phanerochaete chrysosporium

BackgroundAs a ubiquitous filamentous fungal, Aspergillus spp. play a critical role in lignocellulose degradation, which was also defined as considerable cell factories for organic acids and industrially relevant enzymes producer. Nevertheless, the production of various extracellular enzymes can be influenced by different factors including nitrogen source, carbon source, cultivation temperature, and initial pH value. Thus, this study aims to reveal how amino acids affect the decomposition of lignocellulose by Aspergillus fumigatus Z5 through transcriptional and proteomics methods.ResultsThe activities of several lignocellulosic enzymes secreted by A. fumigatus Z5 adding with cysteine, methionine, and ammonium sulfate were determined with the chromatometry method. The peak of endo-glucanase (7.33 ± 0.03 U mL−1), exo-glucanase (10.50 ± 0.07 U mL−1), β-glucosidase (21.50 ± 0.22 U mL−1), and xylanase (76.43 ± 0.71 U mL−1) were all obtained in the Cys treatment. The secretomes of A. fumigatus Z5 under different treatments were also identified by LC–MS/MS, and 227, 256 and 159 different proteins were identified in the treatments of Cys, Met, and CK (Control, treatment with ammonium sulfate as the sole nitrogen source), respectively. Correlation analysis results of transcriptome and proteome data with fermentation profiles showed that most of the cellulose-degrading enzymes including cellulases, hemicellulases and glycoside hydrolases were highly upregulated when cysteine was added to the growth medium. In particular, the enzymes that convert cellulose into cellobiose appear to be upregulated. This study could increase knowledge of lignocellulose bioconversion pathways and fungal genetics.ConclusionsTranscriptome and proteome analyses’ results indicated that cysteine could significantly promote the secretion of lignocellulosic enzymes of an efficient lignocellulosic decomposing strain, A. fumigatus Z5. The possible reason for these results is that Z5 preferred to use amino acids such as cysteine to adapt to the external environment through upregulating carbon-related metabolism pathways.

Characterization of pyrene degradation by halophilic Thalassospira sp. strain TSL5-1 isolated from the coastal soil of Yellow Sea, China

Effective remediation of aged HMW-PAHs polluted agricultural soil by the combination of Fusarium sp. and smooth bromegrass (Bromus inermis Leyss.)

ABSTRACTBiodegradation of polycyclic aromatic hydrocarbons (PAHs) is a major concern in the environment due to their toxic nature and ubiquitous occurrence. PAHs remain sorbed to soil organics and interact with non-aqueous phases and therefore, become less available for degradation. Several microorganisms like bacteria, fungi, and algae have the capability to degrade soil-sorbed PAHs using different metabolic pathways. The focus of this review is microbial degradation of high molecular weight PAH pyrene by pure and mixed culture, including biological aspects of biosurfactants produced during the process for increasing the bioavailability of soil-sorbed or non-aqueous phase pyrene. High molecular weight PAHs are generally recalcitrant to microbial attack, although some bacteria, fungi, and algae are capable of transforming these compounds by using them as the sole source of carbon and energy. Also, the use of microbial consortium has been found to be more efficient and better from an economic point of view for degradation due to synergistic interactions among microbial species. The review also explains the role of catabolic genes involved in the degradation of pyrene.

Environmental protection from emerging pollutants has become a significant challenge for mankind as an increasing number of contaminants, including synthetic dyes and polycyclic aromatic hydrocarbons (PAHs), represent a serious risk to ecological and environmental balance. Most synthetic dyes have complex aromatic structures and are resistant to degrade by classical approaches, such as physical and chemical processes, including adsorption, chemical coagulation, flocculation, ion exchange, membrane separation, froth flotation, and reverse osmosis. Enzymes-assisted catalytic transformation of pollutants has become a potential alternative to classical methods because of their ability to react with complex compounds, a quick degradation rate, and producing less harmful by-products. Plant peroxidases, and microbial laccase and lignin-degrading peroxidases (manganese and lignin peroxidase) have gained significant attention for treating aromatic waste due to their capability of oxidizing and detoxifying a wide range of recalcitrant xenobiotics, including PAHs and synthetic dyes. Peroxidases being efficient biocatalysts detoxify an array of toxic compounds by simple free-radical mechanism resulting in the formation of oxidized and depolymerized products of significantly reduced toxicity. Moreover, it is an ecofriendly and economically favorable approach towards the biodegradation of recalcitrant and toxic industrial waste. Among microbial and plant peroxidases, bacterial enzymes have broad substrate specificity and can transform a wide range of recalcitrant substrates. Ligninolytic enzymes oxidize the aromatic ring into quinones and acids by producing free hydroxyl radicals instead of dihydrodiols and mineralize aromatic hydrocarbon in combination with cytochrome P450, monooxygenases, and epoxide hydrolases. In the review, an attempt has been made to provide detailed knowledge about the availability of inexpensive peroxidases sources, their mechanism of action, and degradation potential. The present review summarizes the exploitation of peroxidases from plants, bacteria, and fungus (manganese peroxidase, lignin peroxidase, and laccases) for detoxification and degradation of textile dyes as well as PAHs. Conclusively, peroxidases have great potential to react with almost all classes of synthetic dyes and most PAHs due to broad substrate specificity and transformed them into less harmful metabolites.

Identification of pyrene degraders via DNA-SIP in oilfield soil during natural attenuation, bioaugmentation and biostimulation

The natural biodegradation of seven polycyclic aromatic hydrocarbons (PAHs) by native microorganisms was studied in five soils from Normandy (France) from diffusely polluted areas, which can also pose a problem in terms of surfaces and amounts of contaminated soils. Bioavailability tests using cyclodextrin-based extractions were performed. The natural degradation of low molecular weight (LMW) PAHs was not strongly correlated to their bioavailability due to their sorption to geosorbents. Conversely, the very low degradation of high molecular weight (HMW) PAHs was partly correlated to their poor availability, due to their sorption on complexes of organic matter and kaolinites or smectites. A principal component analysis allowed us to distinguish between the respective degradation behaviors of LMW and HMW PAHs. LMW PAHs were degraded in less than 2-3 months and were strongly influenced by the relative percentage of phenanthrene-degrading bacteria over total bacteria in soils. HMW PAHs were not significantly degraded, not only because they were less bioavailable but also because of a lack of degrading microorganisms. Benzo[a]pyrene stood apart since it was partly degraded in acidic soils, probably because of a catabolic cooperation between bacteria and fungi.

Source analysis and influencing factors of historical changes in PAHs in the sediment core of Fuxian Lake, China

PAH emission from the incineration of waste oily sludge and PE plastic mixtures

&amp;lt;p&amp;gt;The current research builds on the findings of a systematic literature review by the authors which recommends the need to work towards a standardised method for measuring the in vitro dermal absorption of HMW-PAH in soils. One part of the method is understanding the partitioning of the high molecular weight polycyclic aromatic hydrocarbons (HMW-PAH) from soil to sebum found in skin. In vitro HMW-PAH soil-sebum partition coefficients (KSS) were measured for twelve soils collected from former UK gasworks.&amp;amp;#160; Concentrations of &amp;amp;#8721;16 USEPA PAH in the soils ranged from 51 to 1440 mg/kg, benzo[a]pyrene ranged from 3.2 to 132 mg/kg. Time series extractions (0.5, 1, 2, 4, 8 and 24 h) at skin temperature (32&amp;amp;#176;C) of HMW-PAH from sebum to soil for two samples were conducted to determine the maximum release time-step. The maximum HMW-PAH release time-step was determined as 4 h, which was subsequently used as the extraction time for the remaining samples. Evaluation of KSS data for the 4 h extractions showed that soil type and selected HMW-PAH properties (literature based molecular weight and octanol-carbon partition coefficients) affect the amount of HMW-PAH released from soil into sebum. Characterisation of soil properties was limited to total organic carbon, which showed no relationship to KSS. Selected soils showed distinctly higher K&amp;amp;#172;SS than others. The relationship between MW and KSS was statistically significant while the relationship between KOC and KSS was not statistically significant. Further research effort is required to improve our understanding of which soil and HMW-PAH properties affect the release of HMW-PAH from soil into sebum and the reasons why.&amp;lt;/p&amp;gt;