Insight into the genetic diversity of Selle Français horse populations based on whole D-loop sequencing of mitochondrial DNA

Abstract

The Selle Français (SF) breed originated from native France horses crossed with Thoroughbreds, Arabs, Anglo-Arabs and French Trotters, which allowed for individuals to be obtained with excellent predispositions and a versatile usage for equestrian sports. The performance of the SF horse is widely accepted in the fields of show jumping and eventing; however, they have successfully started to compete in other areas such as dressage, vaulting, carriage driving and TREC competitions. To date, information about the genetic structure of the SF breed has been very limited. In the present report, Sanger sequencing was applied to analyse the whole D-loop of mitochondrial DNA of 98 samples representing Selle Français horses originating from two populations: Algerian (n=47) and French (n=51). The result obtained showed the presence of 19 SNPs, which allowed us to divide the samples into 41 haplotypes (OR909723‐OR909773). A higher number of haplotypes was detected in the Algerian population (n=24) compared to the French population (n=14), but both populations did not represent unique clusters and showed a high degree of genetic similarities. The result showed that the identified haplotypes of the SF belonged to four clades: L, A, B and G. The present report gives strong evidence that the Selle Français breed has been established based on a great influence of the Thoroughbred, whose close connection is more visible in the French population. The haplogroup assignment to L clades proved that the SF breed has European origin as ancestral haplogroup L was assigned to West and South Europe while A to West Asia and G and B to Middle East. Our results show SF as an example of a contemporary breed of sport horses with European roots further influenced by local breeds.