Abstract

We study a connection between chemical thermodynamics and information geometry. We clarify a relation between the Gibbs free energy of an ideal dilute solution and an information-geometric quantity called an $f$-divergence. From this relation, we derive information-geometric inequalities that give a speed limit for a changing rate of the Gibbs free energy and a general bound of chemical fluctuations. These information-geometric inequalities can be regarded as generalizations of the Cram\'{e}r--Rao inequality for chemical reaction networks described by rate equations, where unnormalized concentration distributions are of importance rather than probability distributions. They hold true for damped oscillatory reaction networks and systems where the total concentration is not conserved so that the distribution cannot be normalized. We also formulate a trade-off relation between speed and time on a manifold of concentration distribution by using the geometrical structure induced by the $f$-divergence. Our results apply to both closed and open chemical reaction networks, thus they are widely useful for thermodynamic analysis of chemical systems from the viewpoint of information geometry.

Highlights

  • The history of chemical thermodynamics originates around the middle of the nineteenth century [1,2]

  • One of the most important results of chemical reaction network theory (CRNT) is that a class of chemical reaction networks called a complex balanced network has a Lyapunov function, which can be associated with thermodynamic quantities such as the Gibbs free energy [3,6,7]

  • We have studied thermodynamics of chemical reaction networks in terms of information geometry

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Summary

INTRODUCTION

The history of chemical thermodynamics originates around the middle of the nineteenth century [1,2]. One of the most important results of CRNT is that a class of chemical reaction networks called a complex balanced network has a Lyapunov function, which can be associated with thermodynamic quantities such as the Gibbs free energy [3,6,7]. This Lyapunov function is called the pseudo-Helmholtz function, and its time derivative is connected to the entropy production rate [8,9].

Kinetics of chemical reaction networks
Equilibrium conditions
Gibbs free energy with divergence
Entropy production rate and affinity
THERMODYNAMICS OF OPEN CHEMICAL REACTION NETWORKS
Setup for open CRNs
One way to associate G with D
Another way to associate G with D
INFORMATION GEOMETRY
Fisher information
Geometrical structure of chemical thermodynamics
Speed limit on the Gibbs free energy
Generalized Cramér–Rao inequality for chemical reaction networks
Geometry of stoichiometric compatibility class
Speed limit in damped Brusselator
Trade-off relations on stoichiometric compatibility class
CONCLUSION

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