In situ dosing of monochloramine in a hospital hot water system results in drastic microbial communities changes.

Total microbial cell counts and the content of deoxyribonucleic acid (DNA) and adenosine triphosphate (ATP) were determined in ruminal and abomasal digesta and in faeces from heifers fed a basal diet of barley and straw supplemented with urea, casein, soybean‐protein concentrate or feather meal. The concentration of ATP in the rumen content varied independently of the DNA content and total cell count, but dependently upon the nitrogen sources, the highest ATP/DNA ratio being obtained with casein. The ATP/DNA ratio in faeces was only one‐tenth of that found in the digesta of the rumen and abomasum, indicating either an extremely low level of activity of the microbial cells or more probably a very large number of dead organisms. It is suggested that DNA and ATP might be useful indices of the microbial status in terms of biomass and metabolic activity. The total cell count should still be included in routine studies to determine the proportion of protozoa to bacteria.

Intensive agriculture has major negative impacts on ecosystem diversity and functioning, including that of soils. The associated reduction of soil biodiversity and essential soil functions, such as nutrient cycling, can restrict plant growth and crop yield. By increasing plant diversity in agricultural systems, intercropping could be a promising way to foster soil microbial diversity and functioning. However, plant–microbe interactions and the extent to which they influence crop yield under field conditions are still poorly understood. In this study, we performed an extensive intercropping experiment using eight crop species and 40 different crop mixtures to investigate how crop diversity affects soil microbial diversity and activity, and whether these changes subsequently affect crop yield. Experiments were carried out in mesocosms under natural conditions in Switzerland and in Spain, two countries with drastically different soils and climate, and our crop communities included either one, two or four species. We sampled and sequenced soil microbial DNA to assess soil microbial diversity, and measured soil basal respiration as a proxy for soil activity. Results indicate that in Switzerland, increasing crop diversity led to shifts in soil microbial community composition, and in particular to an increase of several plant-growth promoting microbes, such as members of the bacterial phylum Actinobacteria. These shifts in community composition subsequently led to a 15 and 35% increase in crop yield in 2 and 4-species mixtures, respectively. This suggests that the positive effects of crop diversity on crop productivity can partially be explained by changes in soil microbial composition. However, the effects of crop diversity on soil microbes were relatively small compared to the effects of abiotic factors such as fertilization (three times larger) or soil moisture (three times larger). Furthermore, these processes were context-dependent: in Spain, where resources were limited, soil microbial communities did not respond to crop diversity, and their effect on crop yield was less strong. This research highlights the potential beneficial role of soil microbial communities in intercropping systems, while also reflecting on the relative importance of crop diversity compared to abiotic drivers of microbiomes and emphasizing the context-dependence of crop–microbe relationships.

Mitigation of opportunistic drinking water pathogens by onsite monochloramine disinfection in a hospital water system.

The clinical significance of recovery of Mycobacterium avium complex (MAC) organisms from respiratory specimens is poorly understood. One hundred sixty-one respiratory MAC isolates from 131 patients at Grady Memorial Hospital (Atlanta) and 13 MAC isolates from the hospital's hot water system were examined. Of the 131 patients, 35 (27%) had MAC disease, and 96 (73%) did not; 94 (72%) were human immunodeficiency virus infected. Ten different clusters were identified by pulsed-field gel electrophoresis. Patients without MAC disease were significantly more likely to have clustered isolates than were patients with MAC disease. Of 110 MAC isolates recovered from patients without MAC disease, 72 (65%) were part of a single large cluster that contained isolates recovered from the hospital's hot water system; 13 (25%) of 51 isolates from patients with MAC disease were also in this cluster. We conclude that acquisition of MAC from institutional water systems leads to substantial MAC disease but that most patients with MAC recovered from respiratory specimens have only transient colonization by MAC.

Effect of extracellular adenosine triphosphate hydrolysis by apyrase on bleomycin-induced circulating and alveolar mononuclear phagocyte activation and lung inflammation.

Flow-cytometric total bacterial cell counts as a descriptive microbiological parameter for drinking water treatment processes

Domestic hot-water boilers harbour active thermophilic bacterial communities distinctly different from those in the cold-water supply

Effective environmental sampling strategies for monitoring Legionella spp contamination in hot water systems

Legionella pneumophila contamination of hot water systems are particularly difficult to control due to the optimal growth conditions, protection by biofilms and the fact that chlorine and many other disinfectants are less effective at high temperatures. This paper reports on a 20 month study using an innovative method to control Legionella pneumophila in the closed loop hot water system of a major hospital in Israel, which has suffered a serious out-break of Legionnaires disease in their BMT unit. They had failed to control the Legionella infections by the conventional use of repeated shock treatments with chlorine up to 2000 ppm and by raising the water temperature to 700C. During the period between October 2005 and May 2007 an innovative disinfectant process based on a patented, stabilized, non-toxic, taste free, bactericidal/bacteriostatic, heat resistant formulation of hydrogen peroxide containing a minute amount of oligodynamic silver (commercial name STERIL) was used to effectively disinfect the hot water system and achieve total long term control of Legionella pneumophila. The combined formulation of H2O2 and silver and other metals is some 100 times more powerful as a disinfectant than hydrogen peroxide alone and can provide a long lasting effective disinfectant residual. Our studies show that the formulation's disinfection power increases significantly as water temperature increases which contributes to its effective control of Legionalla bacteria in hot water systems which normally operate at temperatures up to 40-500C. The silver ion deposit on the pipe walls have a bacteriostatic effect. At the end of the 24 month test period it can be stated that the stabilized H2O2-silver formulation effectively controlled Legionella pneumophila in the hospital ward's hot water system for the first time after years of chronic problems and has proved to be a promising and economical option for the long term control of Legionella bacteria in closed loop hot water systems.

Drinking water quality and formation of biofilms in an office building during its first year of operation, a full scale study

Adverse effects of levofloxacin and oxytetracycline on aquatic microbial communities

Fungal diversity and presence of potentially pathogenic fungi in a hospital hot water system treated with on-site monochloramine

BackgroundCooling towers are a major source of large community-associated outbreaks of Legionnaires’ disease, a severe pneumonia. This disease is contracted when inhaling aerosols that are contaminated with bacteria from the genus Legionella, most importantly Legionella pneumophila. How cooling towers support the growth of this bacterium is still not well understood. As Legionella species are intracellular parasites of protozoa, it is assumed that protozoan community in cooling towers play an important role in Legionella ecology and outbreaks. However, the exact mechanism of how the eukaryotic community contributes to Legionella ecology is still unclear. Therefore, we used 18S rRNA gene amplicon sequencing to characterize the eukaryotic communities of 18 different cooling towers. The data from the eukaryotic community was then analysed with the bacterial community of the same towers in order to understand how each community could affect Legionella spp. ecology in cooling towers.ResultsWe identified several microbial groups in the cooling tower ecosystem associated with Legionella spp. that suggest the presence of a microbial loop in these systems. Dissolved organic carbon was shown to be a major factor in shaping the eukaryotic community and may be an important factor for Legionella ecology. Network analysis, based on co-occurrence, revealed that Legionella was correlated with a number of different organisms. Out of these, the bacterial genus Brevundimonas and the ciliate class Oligohymenophorea were shown, through in vitro experiments, to stimulate the growth of L. pneumophila through direct and indirect mechanisms.ConclusionOur results suggest that Legionella ecology depends on the host community, including ciliates and on several groups of organisms that contribute to its survival and growth in the cooling tower ecosystem. These findings further support the idea that some cooling tower microbiomes may promote the survival and growth of Legionella better than others.23pcaHy_89B27CDjtdCFoxVideo

Changes in bacterial and eukaryotic communities during sewage decomposition in Mississippi river water

The use of high-throughput sequencing technologies with the 16S rRNA gene for characterization of bacterial and archaeal communities has become routine. However, the adoption of sequencing methods for eukaryotes has been slow, despite their significance to natural and engineered systems. There are large variations among the target genes used for amplicon sequencing, and for the 18S rRNA gene, there is no consensus on which hypervariable region provides the most suitable representation of diversity. Additionally, it is unclear how much PCR/sequencing bias affects the depiction of community structure using current primers. The present study amplified the V4 and V8-V9 regions from seven microalgal mock communities as well as eukaryotic communities from freshwater, coastal, and wastewater samples to examine the effect of PCR/sequencing bias on community structure and membership. We found that degeneracies on the 3' end of the current V4-specific primers impact read length and mean relative abundance. Furthermore, the PCR/sequencing error is markedly higher for GC-rich members than for communities with balanced GC content. Importantly, the V4 region failed to reliably capture 2 of the 12 mock community members, and the V8-V9 hypervariable region more accurately represents mean relative abundance and alpha and beta diversity. Overall, the V4 and V8-V9 regions show similar community representations over freshwater, coastal, and wastewater environments, but specific samples show markedly different communities. These results indicate that multiple primer sets may be advantageous for gaining a more complete understanding of community structure and highlight the importance of including mock communities composed of species of interest. The quantification of error associated with community representation by amplicon sequencing is a critical challenge that is often ignored. When target genes are amplified using currently available primers, differential amplification efficiencies result in inaccurate estimates of community structure. The extent to which amplification bias affects community representation and the accuracy with which different gene targets represent community structure are not known. As a result, there is no consensus on which region provides the most suitable representation of diversity for eukaryotes. This study determined the accuracy with which commonly used 18S rRNA gene primer sets represent community structure and identified particular biases related to PCR amplification and Illumina MiSeq sequencing in order to more accurately study eukaryotic microbial communities.