Abstract

In this study, we report our initial results on in situ biosynthesis of S-allyl-l-homocysteine (Sahc) by simple metabolic conversion of allyl mercaptan in Escherichia coli, which served as the host organism endowed with a direct sulfhydration pathway. The intracellular synthesis we describe in this study is coupled with the direct incorporation of Sahc into proteins in response to methionine codons. Together with O-acetyl-homoserine, allyl mercaptan was added to the growth medium, followed by uptake and intracellular reaction to give Sahc. Our protocol efficiently combined the in vivo synthesis of Sahc via metabolic engineering with reprogrammed translation, without the need for a major change in the protein biosynthesis machinery. Although the system needs further optimisation to achieve greater intracellular Sahc production for complete protein labelling, we demonstrated its functional versatility for photo-induced thiol-ene coupling and the recently developed phosphonamidate conjugation reaction. Importantly, deprotection of Sahc leads to homocysteine-containing proteins—a potentially useful approach for the selective labelling of thiols with high relevance in various medical settings.

Highlights

  • Canonical amino acid Methionine (Met) is believed to be the most recent addition to the genetic code with the main role of endogenous antioxidants [1] in proteins

  • The metabolic configuration of E. coli for in situ production of Sahc is shown in Scheme 2 and is essentially based on the previous works in our group on the metabolic synthesis of azidohomoalanine [31,32]

  • The experimental setup based on these features, which allows the residue-specific substitution of canonical amino acids with non-canonical amino acids (ncAAs), is known as the selective pressure incorporation (SPI) method [5,33]

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Summary

Introduction

Canonical amino acid Methionine (Met) is believed to be the most recent addition to the genetic code with the main role of endogenous antioxidants [1] in proteins. Met has very few roles in enzymatic catalytic cycles, whereas in protein folding it behaves similar to the other hydrophobic amino acids [2]. Many non-canonical isosteric analogues and surrogates of Met, which are translationally active, are activated by methionyl-tRNA synthetase (MetRS) with a kinetic turnover similar to those of the native substrate [6]. For this reason, the plasticity of substrate binding in.

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