Abstract
MDC1 plays a critical role in the DNA damage response (DDR) by interacting directly with several factors including γ-H2AX. However, the mechanism by which MDC1 is recruited to damaged sites remains elusive. Here, we show that MDC1 interacts with a helix–loop–helix (HLH)-containing protein called inhibitor of DNA-binding 3 (ID3). In response to double-strand breaks (DSBs) in the genome, ATM phosphorylates ID3 at serine 65 within the HLH motif, and this modification allows a direct interaction with MDC1. Moreover, depletion of ID3 results in impaired formation of ionizing radiation (IR)-induced MDC1 foci, suppression of γ-H2AX-bound MDC1, impaired DSB repair, cellular hypersensitivity to IR, and genomic instability. Disruption of the MDC1–ID3 interaction prevents accumulation of MDC1 at sites of DSBs and suppresses DSB repair. Thus, our study uncovers an ID3-dependent mechanism of recruitment of MDC1 to DNA damage sites and suggests that the ID3–MDC1 interaction is crucial for DDR.
Highlights
MDC1 plays a critical role in the DNA damage response (DDR) by interacting directly with several factors including γ-H2AX
Since a tandem BRCA1 C-terminal domain of MDC1 is essential for recruitment of MDC1 to DNA damage sites[17], we screen for tBRCT domain of MDC1-associated proteins and identify a helix–loop–helix (HLH) domain-containing protein called inhibitor of DNA-binding 3 (ID3), which we propose interacts directly with MDC1 and is a key factor in the interaction of MDC1 with γ-H2AX, recruiting MDC1 to doublestrand breaks (DSBs) sites and regulating DDR function of MDC1
To confirm that the tBRCT domain of MDC1 is the location at which ID3 binds, we examined the interaction between these two proteins using a series of internal deletion mutations of MDC1 (Supplementary Fig. 2a)
Summary
MDC1 plays a critical role in the DNA damage response (DDR) by interacting directly with several factors including γ-H2AX. Central to the DSB checkpoint response is ATM protein kinase, which, when activated by DSBs, initiates a signaling cascade that starts with phosphorylation of the histone variant H2AX (γH2AX) at DSB sites, and is followed by recruitment of upstream factors including MDC11, 4, 5. MDC1 functions as an assembly platform to help localize and maintain signaling and repair factors at and around DSB sites[6] In this role, MDC1 amplifies DNA damage signals by binding to phosphorylated H2AX and subsequently binding and retaining additional DDR factors at sites of DNA damage. Since a tandem BRCA1 C-terminal (tBRCT) domain of MDC1 is essential for recruitment of MDC1 to DNA damage sites[17], we screen for tBRCT domain of MDC1-associated proteins and identify a helix–loop–helix (HLH) domain-containing protein called inhibitor of DNA-binding 3 (ID3), which we propose interacts directly with MDC1 and is a key factor in the interaction of MDC1 with γ-H2AX, recruiting MDC1 to DSB sites and regulating DDR function of MDC1
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