Abstract
Species distributed across vast continental areas and across major biomes provide unique model systems for studies of biotic diversification, yet also constitute daunting financial, logistic and political challenges for data collection across such regions. The tree frog Dendropsophus minutus (Anura: Hylidae) is a nominal species, continentally distributed in South America, that may represent a complex of multiple species, each with a more limited distribution. To understand the spatial pattern of molecular diversity throughout the range of this species complex, we obtained DNA sequence data from two mitochondrial genes, cytochrome oxidase I (COI) and the 16S rhibosomal gene (16S) for 407 samples of D. minutus and closely related species distributed across eleven countries, effectively comprising the entire range of the group. We performed phylogenetic and spatially explicit phylogeographic analyses to assess the genetic structure of lineages and infer ancestral areas. We found 43 statistically supported, deep mitochondrial lineages, several of which may represent currently unrecognized distinct species. One major clade, containing 25 divergent lineages, includes samples from the type locality of D. minutus. We defined that clade as the D. minutus complex. The remaining lineages together with the D. minutus complex constitute the D. minutus species group. Historical analyses support an Amazonian origin for the D. minutus species group with a subsequent dispersal to eastern Brazil where the D. minutus complex originated. According to our dataset, a total of eight mtDNA lineages have ranges >100,000 km2. One of them occupies an area of almost one million km2 encompassing multiple biomes. Our results, at a spatial scale and resolution unprecedented for a Neotropical vertebrate, confirm that widespread amphibian species occur in lowland South America, yet at the same time a large proportion of cryptic diversity still remains to be discovered.
Highlights
The application of molecular methods has expedited tremendously the discovery and characterization of global biological diversity [1]
The 16S sequences had an average of 477 base pairs across individuals while the cytochrome oxidase I (COI) sequences had an average of 586 bp
The likelihood ratio test failed to reject the singlethreshold generalized mixed Yule-coalescent (GMYC) model (x2 9 d.f. = 6.09, P-value = 0.7308), the following results are based on this simpler model, which tends to be more conservative in estimating number of statistically significant clusters
Summary
The application of molecular methods has expedited tremendously the discovery and characterization of global biological diversity [1]. This is true for amphibians, where the rate of species descriptions has accelerated enormously in the past 20 years [2,3,4,5,6,7]. Supposedly widespread species occurring across multiple biomes and countries are rarely comprehensively sampled across their complete geographic range in screenings of genetic diversity [5,6] or phylogeographic studies [17,18,19,20,21]. Sampling of species from across vast continental areas and across political borders is often handicapped by financial, logistic and political factors
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