Framework for investigating the current–voltage topographies prediction model of quantum-confined metallic gate enclosed biomolecular nanoribbon based on DFT and machine learning

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Abstract This study presents the optimal prediction model for a quantum-confined adenine molecular nanoribbon, developed using a hybrid approach that integrates density functional theory with machine learning. The proposed framework enables precise prediction of electrical characteristics, including a visual representation of the current–voltage ( I – V ) response. Various electronic properties of the quantum-confined biomolecular nanoribbon are predicted through a regression learner model. To generate and supply training data for constructing future prediction models, the approach incorporates a learnable real-space Hamiltonian method alongside k -point sampling. The best-performing regression learner achieves an accuracy of approximately 89% for this quantum-confined adenine nanoribbon structure. Overall, this method delivers faster and more accurate electronic characterization of quantum-confined, bio-inspired nanoscale systems.

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100. Availability and reporting quality of external validations of ML prediction models with orthopedic surgical outcomes: A systematic review
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100. Availability and reporting quality of external validations of ML prediction models with orthopedic surgical outcomes: A systematic review

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  • 10.1080/17453674.2021.1910448
Availability and reporting quality of external validations of machine-learning prediction models with orthopedic surgical outcomes: a systematic review
  • Apr 18, 2021
  • Acta Orthopaedica
  • Olivier Q Groot + 11 more

Background and purpose — External validation of machine learning (ML) prediction models is an essential step before clinical application. We assessed the proportion, performance, and transparent reporting of externally validated ML prediction models in orthopedic surgery, using the Transparent Reporting for Individual Prognosis or Diagnosis (TRIPOD) guidelines. Material and methods — We performed a systematic search using synonyms for every orthopedic specialty, ML, and external validation. The proportion was determined by using 59 ML prediction models with only internal validation in orthopedic surgical outcome published up until June 18, 2020, previously identified by our group. Model performance was evaluated using discrimination, calibration, and decision-curve analysis. The TRIPOD guidelines assessed transparent reporting. Results — We included 18 studies externally validating 10 different ML prediction models of the 59 available ML models after screening 4,682 studies. All external validations identified in this review retained good discrimination. Other key performance measures were provided in only 3 studies, rendering overall performance evaluation difficult. The overall median TRIPOD completeness was 61% (IQR 43–89), with 6 items being reported in less than 4/18 of the studies. Interpretation — Most current predictive ML models are not externally validated. The 18 available external validation studies were characterized by incomplete reporting of performance measures, limiting a transparent examination of model performance. Further prospective studies are needed to validate or refute the myriad of predictive ML models in orthopedics while adhering to existing guidelines. This ensures clinicians can take full advantage of validated and clinically implementable ML decision tools.

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Construction and comparison of short-term prognosis prediction model based on machine learning in acute ischemic stroke

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  • 10.1016/j.apjon.2022.100128
Development and validation of a machine learning model to predict venous thromboembolism among hospitalized cancer patients
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A Comprehensive Way to Access Hospital Death Prediction Model for Acute Mesenteric Ischemia: A Combination of Traditional Statistics and Machine Learning.
  • Feb 1, 2021
  • International Journal of General Medicine
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PurposeThis study aimed to use traditional statistics and machine learning to develop and validate prediction models for predicting hospital death in patients with AMI and compare these models’ performance.Patients and MethodsData were retrieved from the Medical Information Mart for Intensive Care (MIMIC III) electronic clinical database. A total of 338 eligible AMI patients were divided into a training cohort (n = 238) and a validation cohort (n = 100), and all patients were divided into survival groups and nonsurvival groups according to patients’ hospital outcomes. The performance of the traditional statistics prediction model and the optimal machine learning prediction model was evaluated and compared with respect to discrimination, calibration, and clinical utility in the validation cohort.ResultsUnivariate and multivariate logistic regression analyses identified the following independent risk factors associated with hospital death for AMI in the training cohort, including diastolic blood pressure, blood lactate, blood creatinine, age, blood pH, and red blood cell distribution width. Both the nomogram (AUC = 77.0%, 67.9–86.1%) and optimal machine learning model (AUC = 82.9%, 74.9–91.0%) achieved good discrimination and calibration in the validation cohort. Decision curves analysis showed that the optimal machine learning model has a greater net benefit than that of nomogram in this study.ConclusionThe nomogram achieved a concise and relatively accurate prediction of hospital death in patients with AMI, the machine learning model also has good discrimination and seems to have better clinical utility. Traditional statistics may help infer the relationship between risk factors and hospital death, while machine learning may contribute to a more accurate prediction. Traditional statistics and machine learning are complementary in developing the prediction model for hospital death of AMI. Therefore, a combination of nomogram–machine learning (Nomo-ML) predictive model may improve care and help clinicians make AMI management-related decisions.

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Construction of predictive models for contralateral occult thyroid carcinoma and central lymph node metastasis in unilateral papillary thyroid carcinoma using machine learning
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Modeling the prediction of spontaneous rupture and bleeding in hepatocellular carcinoma via machine learning algorithms
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This study aimed to identify the risk factors associated with spontaneous rupture and bleeding in hepatocellular carcinoma, establish a prediction model for spontaneous rupture bleeding via a machine learning algorithm, and validate and evaluate the predictive efficacy of the model. A retrospective analysis of 4209 patients with hepatocellular carcinoma (HCC) diagnosed at the Second Affiliated Hospital of Nanchang University from April 2019 to November 2023 was performed. Spontaneous rupture and bleeding occurred in 269 (6.4%) of these patients, and the clinical data of 146 patients (case group) were ultimately included, whereas the data of 144 patients without ruptured HCC (control group) were randomly chosen by matching for age, sex, and time of admission from the patients who visited our hospital during the same period. A randomly generated 70% (n = 203) was used as the training set, and the remaining 30% (n = 87) was used as the validation set. They constructed a predictive model for spontaneous rupture bleeding of hepatocellular carcinoma via 10 machine learning methods: Logistic, GBM, Neural Network, Random Forest, AdaBoost, LightGBM, CatBoost, XgBoost, KNN, and SVM models. The optimal model was screened on the basis of the area under the curve (AUC), calibration curves and confusion matrix to assess and compare the predictive performance of the models, the model was interpreted through SHAP plots, and a web-based version of the risk assessment tool for spontaneous rupture and bleeding in hepatocellular carcinoma patients was developed on the basis of the optimal machine learning predictive model. A total of 290 patients with HCC (254 males and 36 females) were included in this study. Analysis revealed that cirrhosis, neutrophil percentage, albumin levels, tumor diameter, and the presence of ascites were key predictors of spontaneous bleeding due to rupture in hepatocellular carcinoma patients. The 290 patients were randomized at a 7:3 ratio, and the training set of 203 patients and the validation set of 87 patients were simultaneously subjected to the construction of the risk prediction model. In the training set, the AUCs of the Logistic, GBM, Neural Network, Random Forest, AdaBoost, LightGBM, CatBoost, XgBoost, KNN, and SVM models are 0.911, 0.956, 0.929, 1.000, 0.919, 0.997, 0.948, 0.927, 0.984, and 0.903, respectively; in the validation set, the AUCs of the Logistic, GBM, Neural Network, Random Forest, AdaBoost, LightGBM, CatBoost, XgBoost, KNN, and SVM models are 0.940, 0.928, 0.939, 0.838, 0.897, 0.855, 0.925, 0.922, 0.888, and 0.946, respectively; among the 10 models, the SVM model has the best predictive performance. On the basis of the results of this study, a predictive model for spontaneous bleeding in hepatocellular carcinoma was presented, and a web-based version of a risk prediction assessment tool was created via SVM modeling to improve its clinical translational value.

  • Abstract
  • 10.1016/j.spinee.2022.06.249
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Two sets of predictive models are developed based on the machine learning (ML) and general orthogonal regression (GOR) approaches for predicting the seismic source parameters including rupture width, rupture length, rupture area, and two slip parameters (i.e., the average and maximum slips of rupture surface). The predictive models are developed based on a compiled catalog consisting of 1190 sets of estimated source parameters. First, the Light Gradient Boosting Machine (LightGBM), which is a gradient boosting framework that uses tree-based learning algorithms, is utilized to develop the ML-based predictive models by employing five predictor variables consisting of moment magnitude (Mw), hypocenter depth, dip angle, fault-type, and subduction indicators. It is found that the developed ML-based models exhibit good performance in terms of predictive efficiency and generalization. Second, multiple source-scaling models are developed for predicting the source parameters based on the GOR approach, in which each functional form has one predictor variable only, that is, Mw. The performance of the GOR-based models is compared with existing source-scaling relationships. Both sets of the models developed are applicable in estimating the five source parameters in earthquake engineering-related applications.

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