Fluorescence polarization of polypeptides having a fluorescent endgroup

Abstract

AbstractThe polarization of fluorescence of a chromophore chemically bound on the NH2 end of a poly(L‐benzyl glutamate) molecule has been studied as a function of temperature, viscosity, and solvent. The relaxation times depend on both the overall rotation of the helix and the local rotation of the endgroup. In m–cresol the endgroup is rigidly bound and the rotational diffusion constant of the molecule is in good agreement with the values obtained by Kerr effect and dielectric relaxation. In other helicogenic solvents (DMF, DCE, etc.) the local rotation is nearly free. In m‐cresol‐DMF mixtures a sharp decrease of the polarization around a composition of 40% DMF can be interpreted as a change in the freedom of rotation of the endgroup. No discontinuity in the optical rotation is observed in the solvent mixture. The question of how a rapidly rotating endgroup could show an extrinsic Cotton effect as observed by Bloutand Yamaoka for the system Acridine Orange–PBLG in chloroform is then raised. Polarization of fluorescence measurements on this system show a nearly complete freedom of rotation of the dye and OH D measurements show no detectable Cotton effect in the dye absorption band.