Fish communities in seasonally isolated lagoons of the Upper Paraná River basin, Southeastern Brazil

Coral reef fish populations are declining due to multiple factors including habitat destruction, overfishing, and climate change. While these can include seasonal impact, seasonal changes can also be a confounding factor, so that seasonal monitoring is essential for detecting true temporal changes in fish community abundance and composition. However, seasonal monitoring is rarely implemented. The aim of this study was to detect the seasonal patterns of coral reef fish community structure around Tidung Kecil Island, Indonesia, using eDNA metabarcoding (eDNA) and underwater visual census (UVC). The UVC identified 32 species belonging to 10 families in the rainy season and 29 species belonging to 7 families in the dry seasons. The eDNA metabarcoding identified 209 species belonging to 56 families and 27 species belonging to 17 families in the rainy and dry seasons, respectively. Based on eDNA metabarcoding data, coral reef fish abundance and community composition differed significantly between seasons (Mann Whitney, p < 0.01), while the UVC method did not detect these seasonal differences (Mann Whitney, p > 0.05). UVC and eDNA data both showed a predominance of omnivorous fishes in the rainy season and carnivorous fishes in the dry season. Ecological indices did not differ significantly between seasons for the two used methods, although the species making the highest contributions to the similarity (SIMPER) analysis differed between methods. Overall, this study confirms the premise that eDNA metabarcoding can be an effective tool for monitoring seasonal variation in coral reef fish communities.

Xel-Ha is a private marine park where the extraction of flora and fauna is not allowed. Here, reef fish are one of the main touristic attractions, but there are no published surveys focused on fish community in this site. In this study we analyzed the spatio-temporal variation of the fish community in different areas of the marine park Xel-Há. Abundance and richness were estimated during one-year period (2012-2013); visual censuses using fixed transects of 100x5 m each distributed in 21 transects along five sites were established in different zones: “Bocana”, “Center”, “North branch”, “Cave” and “River”, including the inlet mouth to the sea, brackish mangrove channels and a zone with freshwater influence. To characterize the fish community, we used species richness, abundance, diversity, and density compared among zones and climatic seasons (rain, “norths” and dry). The similarity among zones and seasons was estimated using a multidimensional scaling analysis. The replacement on the species composition among seasons and sites was realized based on the presence-absence of fish. The influence of physicochemical variables such as temperature, salinity and dissolve oxygen concentration in the fish community was estimated by a principal component analysis. A total of 22 641 individuals were recorded corresponding to sixty-three species over the year. Abundance was higher during the windy season (locally named “norths”) with 7 991 organisms. The most representative species according with abundance and frequency of occurrence were: Haemulon sciurus, H. flavolineatum, Lutjanus griseus, Acanthurus coeruleus, Abudefduf saxatilis, and Gerres cinereus. Diversity increased from the rainy to the dry season; species richness and diversity was lower in “River” than other sites in Xel-Ha. Most species (54 %) species were residents through the year. Four non-shared species were observed during the rainy season and three in dry season. Dissolved oxygen was the most influential variable on the fish community composition among zones. Xel-Ha houses nearly 20 % of fish biodiversity reported for the mexican Caribbean, and the predominance of juveniles of several species confirms its role as a nursery area.

Abstract: The Munim River basin is one of the main river drainages of the Hydrological unit Maranhão, but there are few published studies which focus on ichthyological surveys and taxonomic work within this basin. The present study aims to provide a fish species inventory of the Mata da Itamacaoca, one of the few urban protected areas from the upper Munim River basin, comparing the ichthyofauna with other lists by conducted at the upper Munim River basin. A total of 42 collection expeditions were conducted, the sampling was conducted at five collecting sites distributed within the boundaries of Mata de Itamacaoca, upper Munim River basin. Diversity indices were calculated and generalised linear models (GLMs) were employed to assess differences in species richness, diversity and evenness depending on season and location in relation to the reservoir dam wall. In order to visualize fish community differences, non-metric multidimensional scaling (nMDS) and a one-way PERMANOVA was used to understand whether factors of site, season and location to the dam wall had an effect on fish community compositions. A total of six orders, 13 families, and 23 fish species were found, and the order with the highest species richness, considering all reaches, was Characiformes followed by Cichliformes. The most abundant species was Nannostomus beckfordi, while Pimelodella parnahybae and Hoplerythrinus unitaeniatus were the rarer species sampled. There were no alien invasive species collected within the study area. Species richness was significantly higher below the dam wall, but there were no other significant differences in diversity indices with regards to season or location. Fish community composition was significantly different above and below the dam wall and was significantly affected by sampling site. Season did not have an effect on fish community. This study corroborates other studies conducted in the Unidade Hidrológica Maranhão sensu Hubbert and Renno (2006), that the ichthyofaunal composition and taxonomy of species within this region face major data deficits, anthropogenic impacts, this study may be a baseline for comparing similar environments throughout the region.

Fine-scale spatial patterns in the demersal fish and invertebrate community in a northwest Atlantic ecosystem

Unsaturated Fish Communities in African Rivers

This paper describes the spatial variability of fish communities and identifies patterns of association between fish communities and habitat variables, including anthropogenic factors. We sampled streams inside and in the surroundings of a rain forest reserve in the southeast of Brazil in the rainy season. We could distinguish three main groups of streams: upland streams (draining the upland, flat portions of the mountain ridge of Serra de Paranapiacaba), adventitious streams of clearwater mountain torrents (small streams draining confined valleys in the slopes of this sierra), and large streams of clearwater mountain torrents (relatively unconstrained large streams close to the foots of the mountains). Despite the high variability of fish communities associated with these streams we identified some patterns using exploratory statistical analyses. These patterns were corroborated by additional field observations and information from the scientific literature. The main differences in fish community composition and diversity among the three groups of streams are probably related to large-scale factors such as elevation and position of the stream in the watershed. However, differences within these three groups seem to be mostly due to site-specific factors. Differences of instream characteristics are likely to be caused by natural variability of the ecosystems but also, in some cases, by human disturbances like pollution from human settlements, agriculture and mining.

Summary A total of 966 cichlids, Cichlasoma urophthalmus, was sampled from three karstic water bodies (cenotes) in the Yucatan Peninsula. Sex ratio was not different from 1. Specimens with ripe eggs were found during the dry and rainy seasons in the inland cenote and during the dry, rainy, and north winds seasons in the two wetland cenotes. With respect to relative fecundity, data show the C. urophthalmus inland population as two- to three-fold greater (53.1 ± 27.7) than the wetland populations (15.7 ± 5.1 and 18.2 ± 3.1). This is attributable to the different breeding strategies of C. urophthalmus populations inhabiting these two types of cenotes. In particular, the ichthyofauna from the two wetlands showed not only higher species richness (17 and 16 species) but also a higher number of potential predators (nine and eight species) as compared to the inland cenote (six species; two potential predators). It is hypothesized that C. urophthalmus adjusts its clutch size and extends its breeding periods as a response to riskier sites as compared to more secure ones; a higher competition for breeding sites and to increased fishing mortality.

The western Himalayan region is a biodiversity hotspot. Although much of the flora and fauna has been documented, there are very few studies on fungal diversity. We present the statistical analyses of the sample collections from the last 150 years of data in the fungarium of the Forest Research Institute. We found that the host tree species—pine, oak, deodar, and spruce, had very high Shannon diversity (SD) and species richness (SR), while Dalbergia and Rhododendron had moderate to low SD and SR values; although sal occurs at lower altitudes, it has high SD and SR values. Among fungal families, the highest SD and SR value was found in Polyporaceae. Hymenochaetaceae, Peniophoraceae, Coleosporiaceae, and Stereaceae also showed SD with moderate SR. Fomitopsidaceae, Cronartiaceae, Ganodermataceae, and Thelephoraceae have low biodiversity and species. Thelephoraceae are distributed above 2000 m altitude, and Ganodermataceae and Hymenochaetaceae have wider distribution ranges, namely, 0–3500 m and 0–5000 m, respectively. The Polyporaceae show diverse variations in species distribution and occur between 0 and 4500 m; Coleosporiaceae and Cronartiaceae around 2000 m; Stereaceae, Meruliaceae, Peniophoraceae, and Fomitopsidaceae occur between 1700 and 1800 m, with all Stereaceae and Fomitopsidaceae having different distribution ranges of up to 5000 m. We found that areas with relatively low rainfall had lower species richness, and vice versa, and that high solar radiation negatively affected fungal density and SR, as observed in the distribution of Thelephoraceae. While families with high SD and SR values such as Polyporaceae were found under relatively high rainfall, moderate solar radiation, and high temperatures. Similar studies need to be undertaken in other parts of the Himalayas and the importance of fungi in ethnobotany needs to be understood to ensure sustainable use.

Comparing diversity and structure of freshwater fish assemblages using environmental DNA and gillnetting methods: A case study of a large deep reservoir in East China

Structural and functional composition of fish communities associated to Zostera noltii meadows as a response to natural habitat recovery

In order to understand species composition and diversity of fish communities in the ecotone between the Yellow Sea and Bohai Sea, we examined species composition and temporal and spatial variations of fish species diversity using the relative importance index (IRI), species diversity index and k dominance curve based on bottom trawl survey data of fish resources in the adjacent waters of the Changshan Islands in October 2016, January, May and August 2017. The results showed that 77 fish species were captured, mainly temperate water fishes, demersal fishes and migratory fishes. The dominant species exhibited obvious seasonal variation. The dominant species in spring and winter were Lophius litulon, and those in summer were pelagic species such as Scomber japonicus and Engraulis japonicus. A total of 46 migratory fish species were found throughout the year. The seasonal species migration indices were all higher than 100, while the species migration index was the largest in autumn. The species diversity index showed high spatial and temporal dynamics, with the highest species richness in spring and the highest Shannon diversity and evenness in autumn. There was a significant negative correlation between species richness and sea surface temperature in summer, significant positive correlations between species richness and depth and bottom temperature in winter, and a significant positive correlation between Shannon diversity index and sea bottom temperature. In short, fish community showed high species diversity, rich migratory species and obvious temporal and spatial heterogeneity in the adjacent waters of the Changshan Islands, which is an ecotone between the Yellow Sea and the Bohai Sea.

We evaluated the influence of habitat connectivity and local environmental factors on the distribution and abundance of functional fish groups in 10 floodplain lakes in the Biebrza River, northeastern Poland. Fish were sampled by electrofishing, and 15 physico-chemical parameters were recorded at three sampling sites at each lake in the period of 2011–2013. A total of 18,399 specimens, belonging to 23 species and six families, were captured. The relationships between environmental factors and fish communities were explored with the use of canonical correspondence analysis (CCA). Sampling sites were grouped based on fish communities using a hierarchical cluster analysis (HCA). Along a lateral connectivity gradient from lotic to lentic habitats (parapotamic–plesiopotamic–paleopotamic), the proportions of rheophilic species were determined as 10:5:1, whereas the proportion of limnophilic species was determined as 1:2:5. The predominant species were the roach (Rutilus rutilus), and pike (Esox lucius) in parapotamic lakes, rudd (Scardinius erythropthalmus) and pike in plesiopotamic lakes, and sunbleak (Leucaspius delineates) and Prussian carp (Carassius auratus gibelio) in paleopotamic lakes. The findings indicated that the composition and abundance of fish communities are determined by lake isolation gradient, physico-chemical parameters and water stage. Although intact riverine ecosystems may promote fish biodiversity, our findings suggest that lateral connectivity between the main channel and floodplain lakes is of utmost importance. Thus, the conservation of fish biodiversity requires the preservation of this connectivity.

The fish community of temporary wetlands is highly dynamic due to the marked seasonal changes in hydrological and limnological conditions. In this study, we evaluated spatiotemporal variation in the fish community and the influence of environmental factors on this variation in temporary wetlands in southern Brazil. Two different life cycles—annual and non‐annual fishes—were recorded among species. Variation in the fish community appeared to be associated with differences in the life history strategy of species. While species of annual fish were present throughout the hydroperiod, gradually decreasing in density over time, non‐annual fish species had an opposite pattern, with higher densities in the final phase of the hydrological cycle. Variations in the composition and abundance of fish community in temporary wetlands were related to habitat and landscape attributes (area, number of microhabitats and isolation between temporary wetlands) and climate indicators of water availability (air temperature, average rainfall, and water level of the São Gonçalo channel), but not to water conditions (dissolved oxygen, pH, conductivity and water temperature). We concluded that the ichthyofauna of temporary wetlands are composed both of rare species, highly specialised for life within these ephemeral environments, and widespread generalist species that reach the wetlands opportunistically for short periods. Habitat and landscape attributes and changes in climate and hydrological variables over the hydroperiod are the factors that had the greatest influence on spatiotemporal variation of the fish community. Maintaining physical characteristics and the hydrological cycle of temporary wetlands is critical for the conservation of fish species inhabiting these vulnerable environments in southern Brazil. Habitat and landscape attributes and climate and hydrology fluctuations affect the annual and non‐annual fishes inhabiting temporary wetlands differently.

This study evaluated the spatial variations in species richness and abundance of zooplankton over a hydrological cycle, and also verified the influence of physical and chemical water variables and chlorophyll-α concentrations on the abundance of these organisms. The tested hypothesis was that the zooplankton community presents higher species richness in lotic environments and higher abundance in lentic ones. One hundred forty species were identified, distributed among rotifers (88), testate amoebae (35), cladocerans (13) and copepods (4). Higher values of species richness and abundance were observed during the dry period. During both hydrological periods, the copepods presented high abundance values, due to the contribution of young stages, followed by rotifers, cladocerans and testate amoebae. In general, testate amoebae presented high values of species richness and abundance in lotic sampling stations, whereas the other zooplankton groups (rotifers, cladocerans and copepods) presented higher abundances in lentic environments and higher species richness in lotic ones. The Pearson correlation analysis evidenced the importance of physical and chemical water variables and food resource availability influencing the variation of organisms’ abundance.

Gold mining impacts have generated a great concern regarding aquatic systems and habitat fragmentation. Anthropogenic disturbances on the structure and heterogeneity of a system can have an important effect on aquatic community stability. Ecological rapid assessments (1996, 2002, and 2007) were employed to determine the structure, composition and distribution of tropical fish communities in several rivers and smaller creeks from a gold mining area in Cerro Crucitas, Costa Rica. In addition, species composition and relative abundance were related with habitat structure. A total of 35 species were registered, among which sardine Astyanax aeneus (Characidae) and livebearer Alfaro cultratus (Poeciliidae) were the most abundant fish (71%). The highest species richness was observed in Caño Crucitas (s=19) and Minas Creek (s=18). Significant differences in fish communities structure and composition from Infiernillo river and Minas creek were observed (lamda = 0.0, F(132, 66) = 2.24, p < 0.001). Presence and/or absence of certain species such as Dormitor gobiomorus, Rhamdia nicaraguensis, Parachromis loiseillei and Atractosteus tropicus explained most of the spatial variation among sites. Habitat structure also contributed to explain differences among sites (lamda = 0.004, F(60.183) = 5.52, p < 0.001). Substratum (soft and hard bottom types) and habitat attributes (elevation, width and depth) explained most of the variability observed in Infiernillo River, Caño Crucitas and Tamagá Creek. In addition, a significant association between fish species and habitat structure was observed. This study reveals a high complexity in tropical fish communities that inhabit a gold mine area. Furthermore, it highlights the importance of habitat heterogeneity in fish community dynamics. The loss and degradation of aquatic systems in Cerro Crucitas can have a strong negative effect on fish community structure and composition of local species. A better understanding of the use of specific habitats that serve as essential fish habitats can improve tropical fish conservation and management strategies, thus increasing local diversity, and thereby, the biological importance of the area.