Fashionably early or simply premature: Atlantic salmon ascending the river Alta a year prior to spawning

In Atlantic salmon, as in most salmonids, males can mature early in the life cycle, as small freshwater fish, termed parr, and/or undergo a sea migration before maturing as full-size adults. The alternative life histories are contingent on environmental and social circumstances, such as growth rate, territory quality or any other factor that affects the individual's state. In order to model the choice of life history in this group of commercially valuable species, it is necessary to understand not only the relative contribution of the different male types to subsequent generations, but also to know the factors that affect reproductive success in each type. In this paper we present the results of a study designed to investigate the factors that affect the reproductive success of mature parr. We used highly polymorphic minisatellite DNA markers to analyse paternity in a series of mating experiments where the number and body size of parr were manipulated. The fraction of eggs fertilized by mature parr ranged from 26 to 40 per cent, with individual parr fertilizing up to 26 per cent of the eggs. A strong positive correlation was found between parr size and reproductive success. The relative success of parr decreased with increasing parr number. Data from this and other studies on variation in the timing and degree of parr reproductive success are discussed in relation to the evolution of male mating strategies and life history in salmonids.

Salmonids possess straying abilities that allows them to exploit open territory and establish new populations. Atlantic salmon (Salmo salar) are expanding their distribution primarily as first-generation escapes from aquaculture, whereas Pacific salmon (Oncorhynchus spp.) are expanding their range in polar and temperate regions due to both anthropogenic and natural influences. Here we utilize artificial intergeneric reciprocal crosses to assess the ability of seven species of Pacific salmon to hybridize with Atlantic salmon. Most cross types were found to produce low numbers of hatched embryos, but none survived to sexual maturation. Survivors consisted of diploids and triploids containing both Atlantic and Pacific salmon parental genomes. Thus, introgression of DNA between Pacific and Atlantic salmon may occur to form F1 hybrids, but transmission to subsequent generations is expected to be rare and occur only over evolutionary time scales. Further, the low viability observed for the most part at early stages of development and in both reciprocal crosses indicates that intergeneric crosses in nature between Atlantic and Pacific salmon are expected to have severe fitness consequences for both dams and sires.

Skin morphology and humoral non-specific defence parameters of mucus and plasma in rainbow trout, coho and Atlantic salmon

Soybean meal-induced enteritis in Atlantic salmon (Salmo salar) and Chinook salmon (Oncorhynchus tshawytscha) but not in pink salmon (O. gorbuscha)

Piscirickettsia salmonis, the aetiological agent of salmonid rickettsial septicaemia (SRS), is a global pathogen of wild and cultured marine salmonids. Here, we describe the development and application of a reproducible, standardized immersion challenge model to induce clinical SRS in juvenile pink (Oncorhynchus gorbuscha), Atlantic (Salmo salar) and sockeye salmon (O. nerka). Following a 1‐hr immersion in 105 colony‐forming units/ml, cumulative mortality in Atlantic salmon was 63.2% while mortality in sockeye salmon was 10%. Prevalence and levels of the bacterium in kidney prior to onset of mortality were lower in sockeye compared with Atlantic or pink salmon. The timing and magnitude of bacterial shedding were estimated from water samples collected during the exposure trials. Shedding was estimated to be 82‐fold higher in Atlantic salmon as compared to sockeye salmon and peaked in the Atlantic salmon trial at 36 d post‐immersion. These data suggest sockeye salmon are less susceptible to P. salmonis than Atlantic or pink salmon. Finally, skin lesions were observed on infected fish during all trials, often in the absence of detectable infection in kidney. As a result, we hypothesize that skin is the primary point of entry for P. salmonis during the immersion challenge.

Salmon hold an iconic status along the Atlantic and Pacific coasts of North America, historically providing critical ecosystem services and substantial economic benefits to these regions. Overharvest, fish passage barriers and habitat destruction, in combination with other factors, have resulted in extirpation of approximately 30 % of Pacific (Oncorhynchus spp.) and 90 % of Atlantic salmon (Salmo salar) populations in the contiguous United States (Parrish et al. 1998; Gustafson et al. 2007). Many of the remaining native populations of Atlantic salmon, and Pacific salmon are protected under the U.S. Endangered Species Act (Ford 2011). Significant population declines are also occurring on both coasts in southern Canada (Irvine et al. 2005), where conservation actions are ongoing. This conservation crisis has resulted in extensive research to inform management decisions associated with recovery of endangered salmon populations. Collectively, there is a large and productive research effort in North America focused on conservation of endangered salmon populations. Numerous partnerships are in place to facilitate collaborations among researchers within each of the respective Pacific and Atlantic salmon research communities. In contrast, opportunities for sharing information across these two communities are less structured and usually occur on a small scale—e.g., at international meetings. Publications from these international meetings have typically been collections of concept papers each focused on Atlantic salmon or Pacific salmon (e.g., Lynch et al. 2002; Waples and Hendry 2008). Our goal was to help establish new collaborations between these highly productive research communities by teaming up Atlantic and Pacific salmon biologists. We organized a ‘‘Teaming Up’’ symposium that was held at the 2012 Annual Meeting of the American Fisheries Society in St. Paul, Minnesota, USA. This meeting helped connect scientists with similar interests and it was the catalyst for many new collaborative papers in this special issue. These new teams of Pacific and Atlantic salmon biologists identified areas where collaboration between these research communities W. R. Ardren (&) U.S. Fish and Wildlife Service, Western New England Complex, 11 Lincoln St., Essex Junction, VT 05452, USA e-mail: william_ardren@fws.gov

Salmon species cultured in Chile evidence different levels of susceptibility to the sea louse Caligus rogercresseyi. These differences have mainly been associated with specific immune responses. Moreover, iron regulation seems to be an important mechanism to confer immunity during the host infestation. This response called nutritional immunity has been described in bacterial infections, despite that no comprehensive studies involving in marine ectoparasites infestation have been reported. With this aim, we analysed the transcriptome profiles of Atlantic and coho salmon infected with C.rogercresseyi to evidence modulation of the iron metabolism as a proxy of nutritional immune responses. Whole transcriptome sequencing was performed in samples of skin and head kidney from Atlantic and coho salmon infected with sea lice. RNA-seq analyses revealed significant upregulation of transcripts in both salmon species at 7 and 14dpi in skin and head kidney, respectively. However, iron regulation transcripts were differentially modulated, evidencing species-specific expression profiles. Genes related to heme degradation and iron transport such as hepcidin, transferrin and haptoglobin were primary upregulated in Atlantic salmon; meanwhile, in coho salmon, genes associated with heme biosynthesis were strongly transcribed. In summary, Atlantic salmon, which are more susceptible to infestation, presented molecular mechanisms to deplete cellular iron availability, suggesting putative mechanisms of nutritional immunity. In contrast, resistant coho salmon were less affected by sea lice, mainly activating pro-inflammatory mechanisms to cope with infestation.

Comparative immunity of Salmo salar and Oncorhynchus kisutch during infestation with the sea louse Caligus rogercresseyi: An enrichment transcriptome analysis

Canadian salmonid aquaculture provides a sustainable protein source; however, there are concerns that Atlantic salmon (Salmo salar L.) mariculture reduces wild Pacific salmon survival through interspecific disease transfer. Tenacibaculosis, caused by species of Gram‐negative bacteria in the genus Tenacibaculum, has the potential to be transmitted interchangeably between farmed Atlantic salmon and wild Pacific salmon, though there is a lack of corroboration establishing transmission. To provide evidence for interspecific horizontal transmission of tenacibaculosis from Atlantic salmon to Pacific salmon, Atlantic salmon were bath‐exposed to an isolate of Tenacibaculum maritimum and cohabitated with naïve Atlantic or Chinook salmon (Oncorhynchus tshawytscha W.) for 25 days. Exposed and naïve cohabitant Atlantic salmon exhibited morbidity with multifocal superficial and ulcerative epidermal lesions with intralesional T. maritimum (culture, histology, and qPCR). At 108 CFU mL−1, exposed and naïve cohabitant Atlantic salmon had 43% and 60% mortality, respectively. Contrastingly, cohabitant Chinook salmon experienced no morbidity or mortality, despite successful culture of T. maritimum (108 CFU mL−1n = 5/6 fish; 106 CFU mL−1n = 0/6 fish) from skin swabs. These findings suggest that BC Chinook salmon do not develop clinical tenacibaculosis through interspecific horizontal transmission from farmed Atlantic salmon with mouthrot under the tested conditions and that the presence of T. maritimum alone is insufficient for disease. Further research needs to clarify the genetic differences between hosts and pathogens in different geographical locations, and investigate additional T. maritimum isolates, alternative Tenacibaculum species, environmental variables, and temporal scales that could lead to clinical tenacibaculosis in Chinook salmon.

All anadromous fishes, including juvenile salmon, encounter estuarine habitats as they transition from riverine to marine environments. We compare the estuarine use between juvenile Atlantic salmon (Salmo salar) in the Penobscot River estuary and Pacific salmon (Oncorhynchus spp.) in the Columbia River estuary. Both estuaries have been degraded by anthropogenic activities. Atlantic and Pacific salmon populations in both basins rely heavily on hatchery inputs for persistence. Pacific salmon, as a group, represent a continuum of estuarine use, from species that move through rapidly to those that make extensive use of estuarine habitats. While Atlantic salmon estuarine use is predominantly similar to rapidly moving Pacific salmon, they can exhibit nearly the entire range of Pacific salmon estuarine use. Both slow and rapidly migrating Atlantic and Pacific salmon actively feed in estuarine environments, consuming insect and invertebrate prey. Interactions between juvenile salmon and estuarine fish communities are poorly understood in both estuaries, although they experience similar avian and marine mammal predators. Estuaries are clearly important for Atlantic and Pacific salmon, yet our understanding of this use is currently insufficient to make informed judgments about habitat quality or overall estuary health. This review of salmonid migration through and residency within estuaries identifies actions that could hasten restoration of both Atlantic and Pacific salmon populations.

Oxytetracycline (OTC) tissue distribution and elimination by sea water salmon were studied using seapen-cultured chi-nook salmon, Oncorhynchus tshawytscha, and Atlantic salmon, Salmo salar. Chinook salmon were treated with OTC-medicated feed at a rate of 100 mg OTC/kg body weight per day for 10 days in 9°C or 12°C sea water. Atlantic salmon were treated by the same medicated feed and dosage in 7,2°C sea water. At specific time points, 3 or 6 salmon were removed from each sea-pen, sacrificed, and analysed for OTC with HPLC. OTC concentration profiles in chinook salmon tissues were found to be very similar to those of the Atlantic salmon. Tissue OTC concentrations in the salmonids generally decreased in the order of liver>kidney>skin>muscle at the end of the treatment period. The elimination of OTC from the muscle of chinook salmon was markedly affected by water temperature; the half-lives t\\a of OTC elimination from the muscle were 13.59 days and 10.34 days at 9°C and 12°C, respectively. The t\\a of OTC elimination from the muscle of Atlantic salmon was 15.75 days at 7.2°C. These results show that the pharmacokinetics of OTC in Atlantic and chinook salmon are very similar afterperos administration. As a result, OTC pharmacokinetics obtained from a chinook salmon study can be used for dosage adjustment and withdrawal time determination in Atlantic salmon and vice versa

BackgroundSalmon species vary in susceptibility to infections with the salmon louse (Lepeophtheirus salmonis). Comparing mechanisms underlying responses in susceptible and resistant species is important for estimating impacts of infections on wild salmon, selective breeding of farmed salmon, and expanding our knowledge of fish immune responses to ectoparasites. Herein we report three L. salmonis experimental infection trials of co-habited Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha, profiling hematocrit, blood cortisol concentrations, and transcriptomic responses of the anterior kidney and skin to the infection.ResultsIn all trials, infection densities (lice per host weight (g)) were consistently highest on chum salmon, followed by Atlantic salmon, and lowest in pink salmon. At 43 days post-exposure, all lice had developed to motile stages, and infection density was uniformly low among species. Hematocrit was reduced in infected Atlantic and chum salmon, and cortisol was elevated in infected chum salmon. Systemic transcriptomic responses were profiled in all species and large differences in response functions were identified between Atlantic and Pacific (chum and pink) salmon. Pink and chum salmon up-regulated acute phase response genes, including complement and coagulation components, and down-regulated antiviral immune genes. The pink salmon response involved the largest and most diverse iron sequestration and homeostasis mechanisms. Pattern recognition receptors were up-regulated in all species but the active components were often species-specific. C-type lectin domain family 4 member M and acidic mammalian chitinase were specifically up-regulated in the resistant pink salmon.ConclusionsExperimental exposures consistently indicated increased susceptibility in chum and Atlantic salmon, and resistance in pink salmon, with differences in infection density occurring within the first three days of infection. Transcriptomic analysis suggested candidate resistance functions including local inflammation with cytokines, specific innate pattern recognition receptors, and iron homeostasis. Suppressed antiviral immunity in both susceptible and resistant species indicates the importance of future work investigating co-infections of viral pathogens and lice.Electronic supplementary materialThe online version of this article (doi:10.1186/1471-2164-15-200) contains supplementary material, which is available to authorized users.

Interactions of Atlantic salmon in the Pacific Northwest: IV. Impacts on the local ecosystems

There is increasing interest in defining optimal conditions for rearing salmon to market size in recirculating aquaculture systems (RAS). Salinity, however, as a parameter that can be potentially manipulated, has been poorly studied. To address this knowledge gap, we reared coho (Oncorhynchus kisutch (Walbaum, 1792)) and Atlantic (Salmo salar Linnaeus, 1758) salmon from smolt to market size over ∼460 days at five different salinities (0, 5, 10, 20, and 30 ppt) and examined their growth performance. We found that both species reared at intermediate salinities (5–10 ppt) started to show significantly larger body mass than fish reared either in freshwater or full-strength seawater at around days 250–300. These growth-enhancing effects were maintained until day 460. The higher growth in Atlantic salmon at intermediate salinities was associated with a reduced economic feed conversion ratio, but this was not observed in coho salmon. The all-female coho salmon showed no incidence of sexual maturation and negligible cataract formation, while the mixed-sex Atlantic salmon showed high levels of sexual maturation (up to 50%) and presence of cataracts (up to 60%). Our results indicate that all-female coho salmon may be better suited to RAS than Atlantic salmon in some aspects. However, in both species, long-term rearing at intermediate salinities improved growth in RAS.

Abstract