Abstract

Although polyhydroxyalkanoate (PHA) accumulation and mobilization are one of the most general mechanisms for haloarchaea to adapt to the hypersaline environments with changeable carbon sources, the PHA mobilization pathways are still not clear for any haloarchaea. In this study, the functions of five putative (R)-specific enoyl-CoA hydratases (R-ECHs) in Haloferax mediterranei, named PhaJ1 to PhaJ5, respectively, were thoroughly investigated. Through gene deletion and complementation, we demonstrated that only certain of these ECHs had a slight contribution to poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) biosynthesis. But significantly, PhaJ1, the only R-ECH that is associated with PHA granules, was shown to be involved in PHA mobilization in this haloarchaeon. PhaJ1 catalyzes the dehydration of (R)-3-hydroxyacyl-CoA, the common product of PHA degradation, to enoyl-CoA, the intermediate of the β-oxidation cycle, thus could link PHA mobilization to β-oxidation pathway in H. mediterranei. This linkage was further indicated from the up-regulation of the key genes of β-oxidation under the PHA mobilization condition, as well as the obvious inhibition of PHA degradation upon inhibition of the β-oxidation pathway. Interestingly, 96% of phaJ-containing haloarchaeal species possess both phaC (encoding PHA synthase) and the full set genes of β-oxidation, implying that the mobilization of carbon storage in PHA through the β-oxidation cycle would be general in haloarchaea.

Highlights

  • Escherichia coli, the corresponding products are (R)-3HB-CoA and crotonyl-CoA13

  • Through gene knockout, gene complementation and enzyme assays, we showed that PHA mobilization in H. mediterranei could be linked to the β -oxidation cycle by an R-ECH (HFX_5217, named PhaJ1 in this study)

  • All five proteins contain a MaoC-like domain, similar to PhaJAc, which is involved in PHA biosynthesis for supplying (R)-3HB-CoA from fatty acid β -oxidation[4,11]

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Summary

Introduction

Escherichia coli, the corresponding products are (R)-3HB-CoA and crotonyl-CoA13. putative R-ECH and S-ECH may mingle with or locate on these PHA granules. The six PGAPs include putative R-ECH (HFX_5217), phasin PhaP15, regulatory protein PhaR20, PHA synthase subunits PhaE and PhaC21, and PHA depolymerase PhaZh116. Among these PGAPs, only the function of HFX_5217 was not characterized yet in H. mediterranei. The genes of the former five PGAPs form a gene cluster (HFX_5217-phaR-phaP-phaE-phaC) in the genome[15] The organization of this gene cluster suggests that HFX_5217 may function in the PHA metabolism in H. mediterranei. Through gene knockout, gene complementation and enzyme assays, we showed that PHA mobilization in H. mediterranei could be linked to the β -oxidation cycle by an R-ECH (HFX_5217, named PhaJ1 in this study). The results implied that haloarchaea may generally use the PhaJ-linked PHA mobilization and β -oxidation as a flexible adaptation to the changeable carbon sources in high-salt environments

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Results
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