Distribution of the parasitic gold coral morphotype Savalia savaglia (Bertoloni, 1819) in the eastern Adriatic Sea

Mediterranean Sea common dolphins have recently been listed as ‘endangered’ in the IUCN Red list, due to their reported decline since the middle of the 20th century. However, little is know about the number or distribution of populations in this region. We analysed 118 samples from the Black Sea, Mediterranean Sea and eastern North Atlantic at nine microsatellite nuclear loci and for 428 bps of the mtDNA control region. We found small but significant population differentiation across the basin between the eastern and the western Mediterranean populations at both nuclear and mtDNA markers (microsatellite FST = 0.052, mtDNA FST = 0.107, P values ≤ 0.001). This matched the differential distribution and habitat use patterns exhibited by this species in the eastern and the western parts of the Mediterranean Sea. The assignment test of a small number of samples from the central Mediterranean could not exclude further population structure in the central area of the basin. No significant genetic differentiation at either marker was observed among the eastern north Atlantic populations, though the Alboran population (inhabiting the Mediterranean waters immediately adjacent the Atlantic ocean) showed significant mtDNA genetic differentiation compared to the Atlantic populations. Directional estimates of gene flow suggested movement of females out of the Mediterranean, which may be relevant to the population decline. Phylogenetic analysis suggested that the observed population structure evolved recently.

SummaryInter‐ and intra‐specific physiological variations of intertidal macroalgae have been well investigated. However, studies on physiological responses of cryptic algal species have been poorly documented. Bostrychia intricata is a widespread marine red alga in the Southern Hemisphere, and has many cryptic species. We investigated the effect of different salinities and temperatures on the specific growth rate of three cryptic species (N2, N4 and N5) of B. intricata from New Zealand. Our data indicated that all cryptic species grew at the full range of salinities and temperatures tested, but exhibited a significant difference in their specific growth rates. Cryptic species N4 had a higher growth rate than the other two cryptic species under all experimental conditions, whereas cryptic species N2 occasionally showed a higher growth rate than cryptic species N5 at high salinities and lower temperatures. The distinct physiological properties of these cryptic species may explain their distribution pattern (a wider distribution of cryptic species N4 than N2 and N5) in New Zealand. The physiological divergence between the cryptic species could be related to their levels of evolutionary divergence, with more similar physiology between cryptic species, which share a more recent common ancestor (N2 and N5). Our findings underline that morphologically indistinguishable cryptic algal species are different in many other aspects and are truly independent entities.

Numerous planktonic species have disjunct distribution patterns in the world's oceans. However, it is unclear whether these are truly unconnected by gene flow, or whether they are composed of morphologically cryptic species. The marine planktonic chaetognath Sagitta setosa Müller has a discontinuous geographic distribution over the continental shelf in the northeastern Atlantic, Mediterranean Sea, and Black Sea. Morphological variation between these populations has been described, but overlaps and is therefore unsuitable to determine the degree of isolation between populations. To test whether disjunct populations are also genetically disjunct, we sequenced a 504-bp fragment of mitochondrial DNA comprising the cytochrome oxidase II region of 86 individuals. Sequences were highly variable; each represented a different haplotype. Within S. setosa, sequence divergence ranged from 0.2 to 8.1% and strong phylogeographic structure was found, with four main groups corresponding to the northeastern Atlantic, Mediterranean Sea (including Ligurian Sea, Tyrrhenian Sea and Gulf of Gabès), Adriatic Sea, and Black Sea. Two of these (Atlantic and Black Sea) were resolved as monophyletic clades, thus gene flow between disjunct populations of S. setosa has been extremely limited and lineage sorting has taken place. The deepest divergence was between Atlantic and Mediterranean/Black Sea populations followed by a split between Mediterranean and Black Sea populations. The Mediterranean/Black Sea clade comprised three groups, with the Adriatic Sea as the most likely sister clade of the Black Sea. These data are consistent with a colonization of the Black Sea from the Mediterranean. Furthermore, a possible cryptic species was found in the Black Sea with 23.1% sequence divergence from S. setosa. Two possibilities for the evolutionary origin of this species are proposed, namely, that it represents a relict species from the ancient Paratethys, or that it represents another chaetognath species that colonized the Black Sea more recently. Even though the exact timing of disjunction of S. setosa populations remains unclear, on the basis of the geological and paleoclimatic history of the European basins and our estimates of net nucleotide divergence, we suggest that disjunct populations arose through vicariance resulting from the cyclical changes in temperature and sea levels during the Pleistocene. We conclude that these populations have remained disjunct, not because of limited dispersal ability, but because of the inability to maintain viable populations in suboptimal, geographically intermediate areas.

Numerous planktonic species have disjunct distribution patterns in the world's oceans. However, it is unclear whether these are truly unconnected by gene flow, or whether they are composed of morphologically cryptic species. The marine planktonic chaetognath Sagitta setosa Müller has a discontinuous geographic distribution over the continental shelf in the northeastern Atlantic, Mediterranean Sea, and Black Sea. Morphological variation between these populations has been described, but overlaps and is therefore unsuitable to determine the degree of isolation between populations. To test whether disjunct populations are also genetically disjunct, we sequenced a 504-bp fragment of mitochondrial DNA comprising the cytochrome oxidase II region of 86 individuals. Sequences were highly variable; each represented a different haplotype. Within S. setosa, sequence divergence ranged from 0.2 to 8.1% and strong phylogeographic structure was found, with four main groups corresponding to the northeastern Atlantic, Mediterranean Sea (including Ligurian Sea, Tyrrhenian Sea and Gulf of Gabes), Adriatic Sea, and Black Sea. Two of these (Atlantic and Black Sea) were resolved as monophyletic clades, thus gene flow between disjunct populations of S. setosa has been extremely limited and lineage sorting has taken place. The deepest divergence was between Atlantic and Mediterranean/Black Sea populations followed by a split between Mediterranean and Black Sea populations. The Mediterranean/Black Sea clade comprised three groups, with the Adriatic Sea as the most likely sister clade of the Black Sea. These data are consistent with a colonization of the Black Sea from the Mediterranean. Furthermore, a possible cryptic species was found in the Black Sea with 23.1% sequence divergence from S. setosa. Two possibilities for the evolutionary origin of this species are proposed, namely, that it represents a relict species from the ancient Paratethys, or that it represents another chaetognath species that colonized the Black Sea more recently. Even though the exact timing of disjunction of S. setosa populations remains unclear, on the basis of the geological and paleoclimatic history of the European basins and our estimates of net nucleotide divergence, we suggest that disjunct populations arose through vicariance resulting from the cyclical changes in temperature and sea levels during the Pleistocene. We conclude that these populations have remained disjunct, not because of limited dispersal ability, but because of the inability to maintain viable populations in suboptimal, geographically intermediate areas.

Over the last few decades, advances in molecular techniques have led to the detection of strong geographic population structure and cryptic speciation in many benthic marine taxa, even those with long-lived pelagic larval stages. Polychaete annelids, in particular, generally show a high degree of population divergence, especially in mitochondrial genes. Rarely have molecular studies confirmed the presence of 'cosmopolitan' species. The amphinomid polychaete Hermodice carunculata was long considered the sole species within its genus, with a reported distribution throughout the Atlantic and adjacent basins. However, recent studies have indicated morphological differences, primarily in the number of branchial filaments, between the East and West Atlantic populations; these differences were invoked to re-instate Hermodice nigrolineata, formerly considered a junior synonym of H.carunculata. We utilized sequence data from two mitochondrial (cytochrome c oxidase subunit I, 16S rDNA) markers and one nuclear (internal transcribed spacer) marker to examine the genetic diversity of Hermodice throughout its distribution range in the Atlantic Ocean, including the Mediterranean Sea, the Caribbean Sea, the Gulf of Mexico and the Gulf of Guinea. Our analyses revealed generally low genetic divergences among collecting localities and between the East and West Atlantic, although phylogenetic trees based on mitochondrial data indicate the presence of a private lineage in the Mediterranean Sea. A re-evaluation of the number of branchial filaments confirmed differences between East and West Atlantic populations; however, the differences were not diagnostic and did not reflect the observed genetic population structure. Rather, we suspect that the number of branchial filaments is a function of oxygen saturation in the environment. Our results do not support the distinction between H.carunculata in the West Atlantic and H.nigrolineata in the East Atlantic. Instead, they re-affirm the older notion that H.carunculata is a cohesive species with a broad distribution across the Atlantic Ocean.

The myrmecophilous hoverfly, Microdon mutabilis, is listed as a 'Rare' or 'Nationally Notable Species' in UK Red Data Books. As an obligate social parasite, feeding only from ant colonies, its life-style satisfies theoretical conditions under which cryptic speciation is predicted to evolve; namely, strong selection for nonmorphological adaptations that enhance its exploitation of a local subspecies or populations of its host. Samples of larvae and pupae in Ireland, Scotland and England showed that M. mutabilis exploits a single and different host ant species on different sites across its range. In nine southern English colonies, 95.6% of infested nests were of Myrmica scabrinodis whereas in six Irish and two Scottish colonies 100% and 94.2%, respectively, of the infested nests were of Formica lemani, despite M. scabrinodis being common at all sites. Although the adults from 'scabrinodis ' (and 'lemani) populations are cryptic, morphometric measurements of pupae showed consistent diagnostic characters that were sufficiently distinct for these ecotypes to be classed as separate species. We conclude that M. mutabilis is the 'lemanitype' and designate the 'scabrinodis-type' as a new species, Microdon myrmicae spec. nov. Thus, one of the listed threatened species of the British Isles becomes two species, each possessing about half the number of populations and occupying half the range of the original 'species'. Each also inhabits a different sera1 stage within grassland or heathland, and will require a different management regime if its declining populations are to be conserved. 'M. mutabilis' is reported with other host ant species on the European continent. In the light of our results, these may prove to be additional cryptic species. We suggest that cryptic speciation is apt to evolve in species, such as myrmecophiles, endoparasites and koinobiont parasitoids, whose life-styles result in strong selection on their physiological or behavioural characters. The implications for Red Data Book classifications and for practical conservation are discussed.

The European Red List of Habitats provides an overview of the risk of collapse (degree of endangerment) of marine, terrestrial and freshwater habitats in the European Union (EU28) and adjacent regions (EU28+), based on a consistent set of categories and criteria, and detailed data and expert knowledge from involved countries1. A total of 257 benthic marine habitat types were assessed. In total, 19% (EU28) and 18% (EU28+) of the evaluated habitats were assessed as threatened in categories Critically Endangered, Endangered and Vulnerable. An additional 12% were Near Threatened in the EU28 and 11% in the EU28+. These figures are approximately doubled if Data Deficient habitats are excluded. The percentage of threatened habitat types differs across the regional seas. The highest proportion of threatened habitats in the EU28 was found in the Mediterranean Sea (32%), followed by the North-East Atlantic (23%), the Black Sea (13%) and then the Baltic Sea (8%). There was a similar pattern in the EU28+. The most frequently cited pressures and threats were similar across the four regional seas: pollution (eutrophication), biological resource use other than agriculture or forestry (mainly fishing but also aquaculture), natural system modifications (e.g. dredging and sea defence works), urbanisation and climate change. Even for habitats where the assessment outcome was Data Deficient, the Red List assessment process has resulted in the compilation of a substantial body of useful information to support the conservation of marine habitats.

Eliminating the dark matter of data deficiency by predicting the conservation status of Northeast Atlantic and Mediterranean Sea sharks and rays

Phylogeography of the copepod Calanoides carinatus s.l. (Krøyer) reveals cryptic species and delimits C. carinatus s.s. distribution in SW Atlantic Ocean

This work is part of the DiverseShores (PTDC/BIA-BIC/114526/2009) research project, funded by (FCT) under the COMPETE programme supported by the European Regional Development Fund. FCT also supported a Ph. D. grant to P.V. (SFRH/BD/86536/2012). Part of this work was funded by FEDER through COMPETE and by national funds through FCT/MEC in the scope of the projects FCOMP-01-0124-FEDER-015429 (ref. FCT: PTDC/MAR/113435/2009) and PEst-OE/BIA/UI4050/2014.

© 2016 International Phycological Society. Sympatric coexistence of cryptic species, indistinguishable morphological taxa, has increasingly been detected on the basis of molecular data. This discovery raises the interesting question of how cryptic species can coexist, as hypothetically they would need identical ecological resources. The red alga Bostrychia intricata is commonly found along New Zealand shores. Previous studies indicated several cryptic species within this morphospecies, and that some populations have multiple species. This study aimed to determine how coexisting cryptic B. intricata distribute at a small scale. Along the shore of Moa Point, Wellington, we conducted intensive sampling of B. intricata in different habitats with respect to tidal position, wave and sun exposure levels. Our genetic data clearly documented the coexistence of three cryptic species of B. intricata: N2, N4 and N5. Multiple samples from individual algal patches indicated that each patch was made of the same ramet. Our analyses revealed a habitat-related pattern in small-scale distribution of different cryptic B. intricata, suggesting that the distribution of these cryptic species was not random. Cryptic species N4 was found at a higher tidal position than species N2 and N5, whereas cryptic species N2 occurred in more wave-exposed areas than the other species. Discriminant analysis indicated that tidal height strongly influenced the distribution pattern among these cryptic species. Our observations demonstrated that the co-occurrence of three cryptic B. intricata can partly be explained by their occupation of different intertidal habitats, highlighting the nonrandom distribution of coexisting cryptic algal species.

Aim The Mediterranean Sea is a hotspot of endemism and it is warming at two to three times the rate of the global ocean. The continental masses that surround it constrain species range shifts. Therefore, as seawater temperature increases, distributions of marine species may contract into few small cooler refugia, with consequent risk of extinction from range contraction and fragmentation, particularly for endemics. We assess this risk for 15 molluscs of conservation concern occurring in the Mediterranean Sea. Invertebrates have been rarely assessed so far, despite their diversity and their importance for ecosystem functioning. Location The Mediterranean Sea and Eastern Atlantic Ocean. Methods We used ensemble species distribution models to project the future range of our target species and assess their IUCN Red List status. Results As hypothesized, our models predicted major range shifts, contractions and fragmentation in the Mediterranean Sea for all species. Under moderate emission scenarios such as RCP4.5, up to 12 of the 15 target species will be eradicated from the eastern and southern warmer sectors. Under severe emission scenarios such as RCP8.5 and by the end of the century, we predict the global extinction of the endemic Patella ferruginea and Pinna nobilis . Non‐endemic species may buffer range loss in the Mediterranean with range gains in the Atlantic Ocean. Still, we predict that only a single species, Zonaria pyrum , will have marginal total range gains in future climate warming scenarios. Main conclusions Eight species will become threatened and the fate of Patella ferruginea and Pinna nobilis contrasts the belief that marine species are less prone to extinction than continental species under a warming climate.

Aim To investigate biogeographical patterns based on published dinoflagellate records from the Mediterranean and Black Seas, and to provide a tentative list of endemic and Indo‐Pacific dinoflagellates in the Mediterranean Sea.Location Mediterranean Sea, Black Sea.Methods Checklists of dinoflagellates of the Mediterranean and Black Seas were compared with worldwide literature records. Only species reported in the Indo‐Pacific Ocean or exclusively known in the Mediterranean Sea were selected for biogeographical analysis.Results Dinoflagellates in the Mediterranean Sea comprised c. 43% of the world marine species and c. 88% of the dinoflagellate genera. Species richness among the Mediterranean sub‐basins showed marked differences due to the less reliable records of unarmoured (athecate) and rare dinoflagellates. These differences disappeared when only the more easily identifiable taxa were considered. Of the 673 dinoflagellates cited in the Mediterranean, 87% were also reported in the Atlantic Ocean. Only 40 taxa (6% of the total) were considered to be potential Indo‐Pacific species. Most were reported from the Ligurian Sea (21), and only two species from the Levantine basin. The other 48 taxa (7% of total) were known exclusively from the Mediterranean Sea, mainly from the Ligurian Sea. Half of these taxa were reported by a single author.Main conclusions Substantial dinoflagellates species richness can be attributed, in part, to the historical tradition of taxonomic studies in the Mediterranean Sea. The list of species of both Indo‐Pacific and exclusively Mediterranean species included taxa of dubious taxonomic validity or that were insufficiently known. The exclusion of these questionable taxa revealed the near absence of endemic dinoflagellates in the Mediterranean Sea compared with macroscopic organisms. This could be related to: (1) continuous replenishment of the plankton populations by the inflow of Atlantic water through the Strait of Gibraltar, (2) the possibility that species introduced during the Pliocenic flooding after the Messinian salinity crisis have not had enough time to diverge from their Atlantic ancestors, and/or (3) the reliance on traditional taxonomy based on morphological characters, which precludes the detection of cryptic speciation.

One of the most prevalent autochthonous polychaete taxa in the European Atlantic and Mediterranean seas is the genus Hediste (Nereididae, Polychaeta, Annelida). Its species provide food for aquatic life, such as fish and crustaceans, playing significant ecological roles in trophic webs. Until 2022, only the species Hediste diversicolor was referenced for Atlantic and Mediterranean waters; nonetheless, it is a cryptic species, in which Hediste pontii in the Adriatic Sea, and Hediste astae in the Aegean, Black, Caspian, and Baltic seas have recently been established. In this paper, we propose a new species of polychaete, Hediste sinesimplex sp. nov. for the Western Mediterranean, Baltic and Eastern North seas, based on an integrative approach, focusing on traditional taxonomy and DNA barcoding analysis. In addition to the morphological description, we have also included 3D models of this new species to exemplify the use of this technique for in-depth morphological description.

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