Abstract

Approximately 70% of breast cancers, the leading cause of cancer-related mortality worldwide, are positive for the estrogen receptor (ER). Treatment of patients with luminal subtypes is mainly based on endocrine therapy. However, ER positivity is reduced and ESR1 mutations play an important role in resistance to endocrine therapy, leading to advanced breast cancer. Various methodologies for the detection of ESR1 mutations have been developed, and the most commonly used method is next-generation sequencing (NGS)-based assays (50.0%) followed by droplet digital PCR (ddPCR) (45.5%). Regarding the sample type, tissue (50.0%) was more frequently used than plasma (27.3%). However, plasma (46.2%) became the most used method in 2016–2019, in contrast to 2012–2015 (22.2%). In 2016–2019, ddPCR (61.5%), rather than NGS (30.8%), became a more popular method than it was in 2012–2015. The easy accessibility, non-invasiveness, and demonstrated usefulness with high sensitivity of ddPCR using plasma have changed the trends. When using these assays, there should be a comprehensive understanding of the principles, advantages, vulnerability, and precautions for interpretation. In the future, advanced NGS platforms and modified ddPCR will benefit patients by facilitating treatment decisions efficiently based on information regarding ESR1 mutations.

Highlights

  • This study presented a representative role for ESR1-e2 > coiled-coil domain containing 170 genes (CCDC170) in endocrine therapy resistance

  • Regarding sample types used for molecular assays, tissues such as formalin-fixed paraffin-embedded (FFPE) and fresh frozen samples were once the major resources for detecting ESR1 mutations

  • Comparison of the sample types using a wide range of available data showed that plasma obtained from ethylenediaminetetraacetic acid (EDTA), Streck Cell-free DNA blood, and heparinized tubes have become the more appropriate specimens according to the changes in the adopted molecular assays

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Summary

Epidemiology of Breast Cancer

A total of 2,179,457 new breast cancer cases and 655,690 cancer-related deaths were estimated worldwide in 2020 according to the Global Cancer Observatory compiled and disseminated by the International Agency for Research on Cancer [1]. The age-standardized incidence rates are highest in Australia/New Zealand; western, northern, and southern Europe; northern America; and southern and eastern Africa [4]. These international distributions are associated with cultural and/or environmental changes due to industrialization. Anthropometry, age at menstruation, hormone intake, lactation, and reproductive patterns, including fewer children and later age at first birth, contribute to the epidemiology of breast cancer [5]

Diagnosis and Molecular Heterogeneity of Breast Cancer
Endocrine Therapy and Resistance
Mechanisms of Resistance to Endocrine Therapy
ESR1 Mutation
Aims of This Review for Molecular Assays
Sample Type
Trends in Molecular Assays
Detection Method
Next-Generation Sequencing
Library Preparation
Sequencing Platforms
Bioinformatics
NGS strategies
Droplet Digital PCR
Sanger Sequencing
Pyrosequencing
Real-Time PCR
Microarray
Methylation
Future of Molecular Assays
Conclusions
Limitation
Findings
Global Cancer Observatory
Full Text
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