CoveR: an R package for processing digital cover photography images to retrieve forest canopy attributes

Abstract

Key messagecoveR is an R package for estimating canopy attributes from digital cover photography (DCP) images. The simplicity of the method and the open-accessibility of coveR can effectively extend the accessibility and applicability of DCP to a wider audience.Digital cover photography (DCP) is an increasingly popular tool for estimating canopy cover and leaf area index (LAI). However, existing solutions to process canopy images are predominantly tailored for hemispherical photography, whereas open-access tools for DCP are lacking. We developed an R package (coveR) to support the whole processing of DCP images in an automated, fast, and reproducible way. The package functions, which are designed for step-by-step single-image analysis, can be performed sequentially in a pipeline while ensuring quality-checking of each processing step. A wrapper function ‘coveR()’ is also created to perform all the image processing workflow in a single function. A case study is presented to demonstrate the reliability of canopy attributes derived from coveR in pure beech (Fagus sylvatica L.) stands with variable canopy density and structure. Estimates of gap fraction and effective LAI from DCP were validated against reference measurements obtained from terrestrial laser scanning. By providing a simple, transparent, and flexible image processing procedure, coveR supported the use of DCP for routine measurements and monitoring of forest canopy attributes. This, combined with the possibility to implement DCP in many devices, including smartphones, micro-cameras, and remote trail cameras, can greatly expand the accessibility of the method also by non-experts.