Abstract

Author SummaryEnzymes are proteins that catalyze a large array of chemical reactions, often in partnership with other enzymes. We understand in detail the chemical mechanisms of many of these reactions; however, the importance of the physical movements of enzymes during catalysis (or protein dynamics) is, increasingly, becoming apparent. In this study, we have placed fluorescent markers on an enzyme called cytochrome P450 reductase (CPR) to probe the dynamic changes in the physical conformation of the protein as the reaction chemistry proceeds. CPR catalyses the transfer of electrons from a small molecule donor (called NADPH), ultimately passing them to their partner enzymes called CYPs. We were able to correlate specific conformational changes with distinct chemical steps in CPR. We found that the chemical transformation itself induces the enzyme to adopt conformations that are required for its efficient interaction with CYPs. These findings have allowed us to develop a model of CPR activity in which electron transfer along the pathway from NADPH through CPR to CYP is tightly integrated with physical conformational control of the enzyme.

Highlights

  • The relationship between dynamics and the function of proteins is important

  • We found that the chemical transformation itself induces the enzyme to adopt conformations that are required for its efficient interaction with cytochrome P450 (CYP)

  • We have not attempted to remove the multiple cysteines in the flavin adenine dinucleotide (FAD) domain as we wish to study the wild-type enzyme, since mutagenesis may have unknown effects on the protein dynamics

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Summary

Introduction

The relationship between dynamics and the function of proteins is important. Proteins undergo a wide range of motions in terms of time (10212 to .1 s) and distance Mutagenesis can induce altered landscapes leading to energy traps with consequent effects on catalytic efficiency [7,8]. It is in the nature of catalysis that high energy states are populated transiently during the course of an enzyme-catalyzed reaction. Evidence points to a range of spatial and temporal dynamical contributions to substrate binding, product release, and chemical catalysis [9,10,11]

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