Camera trap method effectively identifies small mammal species in forested habitats

The Neotropical region hosts one of the highest levels of small non-volant mammal species diversity worldwide, but sampling therein is often intractable due to high logistic and labour costs. While most common sampling methods include live trapping (LT) and pitfall trapping (PT), camera trapping (CT) is potentially a useful technique. Studies assessing data acquisition efficiency for neotropical small mammals are mostly limited to LT and PT, and no small mammal study to date included CT. We provide a comparative assessment of the efficiency of LT (Sherman and wire-mesh traps), PT and CT in surveying small mammal species across 25 sites in an Amazonian archipelagic landscape. Based on 26,184 trap nights, we obtained 782 small mammal records representing at least 18 species. Most species were detected by both LT (72.2%) and PT (83.3%), but each of these methods exclusively recorded additional species, whereas CT detected only nearly one-fourth (N = 4) of all species recorded. Nevertheless, for nearly all species detected by CT, the probability of detecting individual species was similar or higher than that of LT. Species detected by CT represented the largest-bodied rodents and marsupials (> 200 g). Pitfall traps are an important complement to LT, and CT comprises an efficient technique to sample large-bodied small mammals. Improvements in the efficiency of camera traps in recording and identifying small-bodied species are both needed and possible, but we recommend the combination of LT and PT methods to enhance the completeness of community-wide small mammal sampling in neotropical forests.

Simple SummaryCamera trapping allows scientists to study a range of species, across large areas for long periods of time, with little impact on animals. It has been readily used to study movements and territories of large mammals but not for smaller species. This is because they often appear too small on camera to be able to identify distinct individuals. The selfie trap is a method that allows for up close and detailed images of small mammals, and our study aimed to test the ability of the method to track the movement and social behaviour of sugar gliders. We found that the selfie trap is an efficient camera trapping method for estimating home ranges and movements due to its ability to obtain high recapture rates for multiple small mammal species and individuals. In our study landscape, linear strips of habitat were readily utilised by all small mammals, highlighting their importance as wildlife corridors in a fragmented landscape. The use of camera traps to track individual mammals to estimate home range and movement patterns, has not been previously applied to small mammal species. Our aim was to evaluate the use of camera trapping, using the selfie trap method, to record movements of small mammals within and between fragments of habitat. In a fragmented landscape, 164 cameras were set up across four survey areas, with cameras left to record continuously for 28 nights. Live trapping was performed prior to ear mark animals to facilitate individual identification on camera. Four small mammal species (sugar glider; Petaurus breviceps; brown antechinus; Antechinus stuartii, bush rat; Rattus fuscipes, and brown rat; Rattus norvigecus) were recorded on camera (N = 284 individuals). The maximum distance travelled by an individual sugar glider was 14.66 km, antechinus 4.24 km; bush rat 1.90 km and brown rat 1.28 km. Movements of both female and male sugar gliders in linear fragments were recorded at much higher rates than in larger patches of forest sampled in grids. Short term core homes ranges (50% KDE) of 34 sugar gliders ranged from 0.3 ha to 4.2 ha. Sugar glider core home ranges were on average 1.2 ha (±0.17) for females and 2.4 ha (±0.28) for males. The selfie trap is an efficient camera trapping method for estimating home ranges and movements due to its ability to obtain high recapture rates for multiple species and individuals. In our study landscape, linear strips of habitat were readily utilised by all small mammals, highlighting their importance as wildlife corridors in a fragmented landscape.

Abundance and diversity of small mammals in response to various linear habitats in semi-arid agricultural landscapes

Camera trapping to study wildlife allows for data collection, without the need to capture animals. Traditionally, camera traps have been used to target larger terrestrial mammal species, though recently novel methods and adjustments in procedures have meant camera traps can be used to study small mammals. The selfie trap (a camera trapping method) may present robust sampling and ecological study of small mammals. This study aimed to evaluate the selfie trap method in terms of its ability to detect species and estimate population density. To address this aim, standard small mammal live trapping was undertaken, immediately followed by camera trapping using the selfie trap. Both methods were set to target the arboreal sugar glider (Petaurus breviceps) and semi-arboreal brown antechinus (Antechinus stuartii). The more ground-dwelling bush rat (Rattus fuscipes) was also live trapped and recorded on camera. Across four survey areas, the probability of detection for each of the three species was higher for selfie traps than for live trapping. Spatially explicit capture-recapture models showed that selfie traps were superior at estimating density for brown antechinus and sugar gliders, when compared to simulated live trapping data. Hit rates (number of videos per various time intervals) were correlated with abundance. When correlating various hit rate intervals with abundance, the use of 10-min hit rate was best for predicting sugar glider abundance (R2 = 0.94). The abundance of brown antechinus was estimated from selfie traps using a 24-h hit rate as a predictor (R2 = 0.85). For sugar gliders, the selfie trap can replace live trapping as individuals can be identified through their unique facial stripes and natural ear scars, and thus used in capture-recapture analysis. This method may be useful for monitoring the abundance of other small mammal species that can also be individually recognized from photographs.

Threats to ecosystems are ever increasing from different drivers mostly being linked to anthropogenic activities. This has brought about various measures to restore/protect the wildlife in these areas. Considering the background of most protected areas in East Africa, small mammals have been given least attention, compared with large mammals, although they play a fundamental role in maintaining ecosystem health. It is therefore necessary to understand how small mammals are distributed in any given ecosystem as a baseline information to enable holistic and informed management. We investigated the diversity and distribution of small mammals in the Selous ecosystem, Tanzania. Two methods were used; Capture Mark Recapture (CMR) using grids of 70 m x 70 m and random placement of havahart traps in the selected habitats. Between July 2018 and June 2020, a total of 887 individuals belonging to 20 species were captured in 28 224 trap nights with 3% trap success. The small mammal species captured consisted of rodents (91.8%), Macroscelidea (3.9%), Carnivores (2.4%) Eulipotyphla (1.6%), and Primates (0.3%). Acomys ngurni (36%) and Aethomys chrysophilus (17%) were the most captured species, whereas Atilax paludinosus (0.23%), Helogale pervula (0.23%), Rattus rattus (0.23%) and Galerella sanguinea (0.11%) were the least contributing species. Acomys ngurui and Lemniscomys rosalia were the most distributed species occurring in all four habitats, whereas Cricetomys ansorgei, Rattus rattus, Mungos mungo and Genetta genetta had low occurrence. Grammomys selousi is reported for the first time in the northern part of the Rufiji River. Acomys ngurni abundance differed significantly (χ2 = 12, df = 3, p = 0.007) between the four habitats being higher in the seasonal riverine forest and across seasons (χ2 = 6, df = 2, p = 0.049), with more individuals occurring in the wet season. The Sable Forest habitat had the highest species diversity (H' = 2.065) and the lowest diversity (H' = 1.506) was recorded in perennial riverine forest/thickets. The highest species diversity (H' = 1.65) was recorded in the dry season and the lowest diversity in the wet season (H' = 1.445). Most small mammals were associated with seasonal riverine forest than other habitats. Overall, the results from this study show that, the park is rich in small mammal fauna. Therefore, considerations in updating the General Management Plan (GMP) and other plans to include the small mammals in the park management actions is recommended.

Large herbivores and termites are important functional groups in African savannahs. Both groups affect small mammals, which are also important determinants for savannah structure and function. Because vegetation on Macrotermes mounds are preferentially grazed by large herbivores, and mounds represent resource-rich distinct habitat patches for small mammals in relatively resource-poor savannahs, termite mounds are ideal sites for studies of how grazing by large mammals and productivity affect communities of small mammals. We conducted an experiment in Lake Mburo National Park, Uganda, with four treatments: large vegetated Macrotermes mounds (with and without large herbivores) and adjacent savannah areas (with and without large herbivores). We replicated the treatment blocks nine times and trapped small mammals regularly over a period of almost 2 years. Small mammal species assemblages differed considerably between mounds and savannah areas. Grazing had a substantial effect on small mammal species assemblages in the resource-poor savannah, but not in the relatively resource-rich termitaria. Small mammal species abundance, biomass, and richness were higher on termite mounds than adjacent savannah areas. Excluding large herbivores caused a major increase in species abundance, biomass, and richness both on savannah and termitaria. Herbaceous plant species evenness was an important determinant of the small mammal community. Small mammal biomass increased with high plant dominance, indicating that a few dominant plant species are important for biomass production of small mammals. Small mammal diversity was not related to any of the treatments, but increased with plant species evenness as well as richness. Fencing increased species dominance in the small mammal community on both savannah and termitaria, probably because competitive patterns shift from inter-guild (that is, between large and small mammals) to intra-guild (that is, between small mammals) when large mammals are excluded. The study highlights the complex interactions among large herbivores, termites, herbaceous plants, and small mammals in African savannahs. When studying the structure and function of small mammal communities it is therefore important to consider several coexisting functional groups.

We investigated species composition, relative abundance, habitat association and density of small mammals in Maze National Park, Ethiopia. Data were collected using the capture-mark-recapture technique in three representative habitat types (grassland, bushland and riverine forest) from November 2021 to August 2022. Descriptive statistics and indices for diversity and evenness were used to analyse the data. A total of 679 rodents and insectivores were collected during a span of 2 646 trap nights. Of these, 534 (76.64%) individuals were newly captured, while 145 (23.36%) were recaptures. Overall trap success was 20.18%. Five species of rodents were captured: four from the family Muridae (Mastomys natalensis, Arvicanthis niloticus, Rattus rattus and Lemniscomys macculus) and one (Xerus rutilus) from the family Sciuridae; and one insectivore species (Elephantulus rufescens) from the family Macroscelididae. Mastomys natalensis (178; 33.3%) was the most abundant, while X. rutilus (1; 0.2%) and E. rufescens (1; 0.2%) were the least abundant. Small mammal species varied significantly with habitat types (χ2 = 6.101, df = 2, p ≤ 0.05), with the highest count in the bushland habitat (197; 36.89 %) and the lowest in riverine forest (152; 28.46%). The bushland and riverine forest habitats supported the highest (H’ = 1.04) and the lowest (H’ = 0.506) diversity of small mammal species, respectively. A relatively high number of small mammal species were caught during the wet season (n = 336) compared to the dry season (n = 198). Future studies using more trapping grids covering additional habitat types and genetic analyses for small mammal species confirmation are necessary for a better understanding of the Park’s small mammal fauna.

Surveys of small and medium sized mammals in northern Queensland with emphasis on improving survey methods for detecting low density populations

Deterministic feedbacks within populations interact with extrinsic, stochastic processes to generate complex patterns of animal abundance over time and space. Animals inherently differ in their responses to fluctuating environments due to differences in body sizes and life history traits. However, controversy remains about the relative importance of deterministic and stochastic forces in shaping population dynamics of large and small mammals. We hypothesized that effects of environmental stochasticity and density dependence are stronger in small mammal populations relative to their effects in large mammal populations and thus differentiate the patterns of population dynamics between them. We conducted an extensive, comparative analysis of population dynamics in large and small mammals to test our hypothesis, using seven population parameters to describe general dynamic patterns for 23 (14 species) time series of observations of abundance of large mammals and 38 (21 species) time series for small mammals. We used state‐space models to estimate the strength of direct and delayed density dependence as well as the strength of environmental stochasticity. We further used phylogenetic comparative analysis to detect differences in population dynamic patterns and individual population parameters, respectively, between large and small mammals. General population dynamic patterns differed between large and small mammals. However, the strength of direct and delayed density dependence was comparable between large and small mammals. Moreover, the variances of population growth rates and environmental stochasticity were greater in small mammals than in large mammals. Therefore, differences in population response to stochastic forces and strength of environmental stochasticity are the primary factor that differentiates population dynamic patterns between large and small mammal species.

The effect of land-use on small mammal diversity inside and outside the Great Fish River Nature Reserve, Eastern Cape, South Africa

SummaryCamera traps are a popular tool for monitoring wildlife though they can fail to capture enough morphological detail for accurate small mammal species identification. Camera trapping small mammals is often limited by the inability of camera models to: (i) record at close distances; and (ii) provide standardised photos. This study aims to provide a camera trapping method that captures standardised images of the faces of small mammals for accurate species identification, with further potential for individual identification. A novel camera trap design coined the ‘selfie trap’ was developed. The selfie trap is a camera contained within an enclosed PVC pipe with a modified lens that produces standardised close images of small mammal species encountered in this study, including: Brown Antechinus (Antechinus stuartii), Bush Rat (Rattus fuscipes) and Sugar Glider (Petaurus breviceps). Individual identification was tested on the common arboreal Sugar Glider. Five individual Sugar Gliders were identified based on unique head stripe pelage. The selfie trap is an accurate camera trapping method for capturing detailed and standardised images of small mammal species. The design described may be useful for wildlife management as a reliable method for surveying small mammal species. However, intraspecies individual identification using the selfie trap requires further testing.

Forest fragmentation and defaunation are considered the main drivers of biodiversity loss, yet the synergistic effects of landscape changes and biotic interactions on assemblage structure have been poorly investigated. Here, we use an extensive dataset of 283 assemblages and 105 species of small mammals to understand how defaunation of medium and large mammals and forest fragmentation change the community composition and diversity of rodents and marsupials in tropical forests of South America. We used structured equation models to investigate the relationship between small mammal species, functional and phylogenetic diversity with forest size, forest cover and the occurrence of medium and large mammals. The best‐fit model showed that defaunation reduced functional diversity, and that species diversity of small mammals increased with forest patch size. Forest cover did not affect functional and phylogenetic diversity. Our results indicate that occurrence of medium and large sized mammals (probably acting as predators, or competitors of small mammals) and forest patch size help to retain species and functional diversity in small mammal communities. Further, the number of species in a small mammal community was critical to the maintenance of phylogenetic diversity, and may have a pronounced influence on the ecological functions played by small mammals. Identifying how phylogenetic and functional diversity change in function of human pressures allows us to better understand the contribution of extant lineages to ecosystem functioning in tropical forests.

Developing methods to effectively survey small, nocturnal mammals is important for conservation and management, as they are prey for many other species, including those of conservation concern, and may be threatened or endangered themselves. The Humboldt's Flying Squirrel (Glaucomys oregonensis), previously thought to be part of the Northern Flying Squirrel species (Glaucomys sabrinus), was recently discovered to be a separate species. The ability to effectively and efficiently survey for this species will be essential to evaluating its conservation status. Here we test a non-invasive method to survey for Humboldt's Flying Squirrels by using baited camera traps in old-growth and second-growth Coastal Redwood (Sequoia sempervirens) forests in northwestern California. We found that the camera trap method was successful at detecting flying squirrels in both stand types; however, the number of detections and activity levels were greater in the old-growth forest. Humboldt's Flying Squirrels may prefer old-growth forest when it is available, but still appear to utilize some second-growth forest stands. Camera traps can be used instead of live trapping when researchers or land managers are interested in determining the presence or absence of Humboldt's Flying Squirrels in forested habitat.

Live trapping is one of the methods typically used to estimate population densities of small mammals, but this is labor-intensive and can be stressful to individuals. We assess the use of camera trap hit (detection) rates as a noninvasive alternative to live trapping for estimating population densities of snowshoe hares (Lepus americanus (Erxleben, 1777)) and red squirrels (Tamiasciurus hudsonicus (Erxleben, 1777))—two common small (≤1.5 kg) mammal species in the boreal forests of northern North America. We compared hit rates from camera trapping to live trapping mark-recapture density estimates and asked if the hit window—the length of time used to group consecutive videos together as single detections or “hits”—has an effect on the correlation between hit rates and live trapping density estimates. The relationship between hit rate and population density was sensitive to hit window duration for red squirrels with R 2 values ranging from 0.41 to 0.68, and a 5-min hit window generated the highest value. R 2 values for snowshoe hares ranged from 0.70 to 0.90, and a 10-min hit window generated the highest value, but hares were live trapped and filmed only at very low densities. Our results indicate that camera trapping is a robust means for estimating the density of red squirrels, but the appropriate hit window duration must be determined empirically if camera trapping data are to be used to monitor populations of this species. Additional live trapping and filming of snowshoe hares is required to better assess camera trapping of this species.

Meadows in river deltas are characterized by a high diversity and abundance of small mammals. However, neither their spatial arrangement nor differences in their use of microhabitat can necessarily explain the dense co‐occurrence of sympatric species. We investigated how several small mammal species share a seasonally flooded meadow of limited size, testing predictions (P1) that herbivore, granivore, insectivore, and omnivore species are separated in time (dominant in different years), (P2) that sympatric species undergo isotopic partitioning, and (P3) that there are intraspecific differences in diet. Stable carbon and nitrogen isotope signatures in the hair of seven synantropic shrew, vole, and mice species were used as a proxy for their diet. We found that the three most abundant species in eight of the nine years were from different diet groups. However, based on the number of species in the functional groups, the state of small mammal community was considered unfavored in five out of the nine investigation years. In years with the greatest dominance of Apodemus agrarius, the small mammal community was characterized by decreased diversity and Micromys minutus was either in low abundance or absent. In 2014 and 2016, years of low abundance or absence of M. oeconomus, M. agrestis, and M. glareolus were both recorded in high numbers. Differences in the isotopic signatures of the three most abundant small mammal species in the community were clearly expressed and core areas in the isotopic space were separated, showing their dependence on different dietary resources. Intraspecific dietary separation between young and adult animals was observed only in M. oeconomus. Thus, the high species diversity of small mammals and the formation of their community in this investigated flooded meadow are maintained by isotopic partitioning (segregation in dietary space) and by changes in their number over time (shifting dominance).