Abstract

INTRODUCTION. To examine the molecular events associated with aging in mammals, we employed oligonucleotide-based arrays to define the transcriptional response to the aging process in mouse gastrocnemius muscle (1) and in two regions of the brain (cerebellum, neocortex) (2). We also studied the influence of retarded mammalian aging induced by caloric restriction (CR) (3, 4) on transcriptional patterns in these tissues. Our choice of tissues was guided by the fact that skeletal muscle and the brain are primarily composed of long-lived, high oxygen-consuming postmitotic cells, a feature shared with another critical aging target (the heart). METHOD. Male C57BL/6 mice were fed either a normal caloric intake or subjected to CR (a 26% reduction in caloric intake). To investigate the influence of age, 5-month-old mice (n = 3) were compared to 30-month-old mice (n = 3) by generating a total of nine pairwise comparisons of the fold changes in gene expression. The average fold change and standard error was computed. To study the influence of CR, 30-month old controls were compared in this same manner to 30-month old mice on CR since 2-months of age. mRNA populations from individual animals were used to generate cRNA, which was then hybridized to individual oligonucleotide arrays (Affymetrix, Santa Clara, CA) to provide data on 6347 genes. The DNA chips were read at a resolution of 6 µm with a Hewlitt-Packard GeneArray Scanner. RESULTS. In the gastrocnemius, aging resulted in gene expression profile indicative of a marked stress response and lower expression of metabolic and biosynthetic genes. Most alterations were either completely or partially prevented by CR, the only intervention known to retard aging in mammals. Transcriptional patterns of calorie-restricted animals suggest that CR retards the aging process by causing a metabolic shift toward increased protein turnover and decreased macromolecular damage. In both regions of the brain, aging resulted in a gene expression profile suggestive of a marked inflammatory response, oxidative stress, and reduced neuronal plasticity and neurotrophic support. At the transcriptional level, brain aging in mice displays striking parallels with human neurodegenerative disorders. In the brain, CR selectively attenuated the age-associated induction of genes encoding inflammatory and stress responses. DISCUSSION. Our observations suggest that specific gene expression patterns are associated with the aging process of individual organs, and that CR can prevent or retard the establishment of many such gene expression alterations. A common feature observed in tissues from old, normally fed mice was the induction of a stress response consistent with a state of increased oxidative stress. This change was opposed by CR. The use of DNA microarrays generates panels of hundreds of transcriptional biomarkers of molecular aging. Accordingly,

Highlights

  • To examine the molecular events associated with aging in mammals, we employed oligonucleotide-based arrays to define the transcriptional response to the aging process in mouse gastrocnemius muscle (1) and in two regions of the brain (2)

  • In the gastrocnemius, aging resulted in gene expression profile indicative of a marked stress response and lower expression of metabolic and biosynthetic genes

  • In both regions of the brain, aging resulted in a gene expression profile suggestive of a marked inflammatory response, oxidative stress, and reduced neuronal plasticity and neurotrophic support

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Summary

Introduction

To examine the molecular events associated with aging in mammals, we employed oligonucleotide-based arrays to define the transcriptional response to the aging process in mouse gastrocnemius muscle (1) and in two regions of the brain (cerebellum, neocortex) (2). We studied the influence of retarded mammalian aging induced by caloric restriction (CR) (3, 4) on transcriptional patterns in these tissues. Our choice of tissues was guided by the fact that skeletal muscle and the brain are primarily composed of long-lived, high oxygen-consuming postmitotic cells, a feature shared with another critical aging target (the heart)

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