Abstract

The central role of protein kinases in controlling disease processes has spurred efforts to develop pharmaceutical regulators of their activity. A rational strategy to achieve this end is to determine intrinsic auto-regulatory processes, then selectively target these different states of kinases to repress their activation. Here we investigate auto-regulation of the innate immune effector protein kinase R, which phosphorylates the eukaryotic initiation factor 2α to inhibit global protein translation. We demonstrate that protein kinase R activity is controlled by auto-inhibition via an intra-molecular interaction. Part of this mechanism of control had previously been reported, but was then controverted. We account for the discrepancy and extend our understanding of the auto-inhibitory mechanism by identifying that auto-inhibition is paradoxically instigated by incipient auto-phosphorylation. Phosphor-residues at the amino-terminus instigate an intra-molecular interaction that enlists both of the N-terminal RNA-binding motifs of the protein with separate surfaces of the C-terminal kinase domain, to co-operatively inhibit kinase activation. These findings identify an innovative mechanism to control kinase activity, providing insight for strategies to better regulate kinase activity.

Highlights

  • Control of enzyme activity by phosphorylation of protein hydroxyls is universal in biology

  • protein kinase R (PKR) encodes an amino-terminal RNA-binding domain, which consists of tandem RNA-binding motifs (RBM1 and RBM2), and a carboxyl-terminal kinase domain that are linked by unstructured regions

  • Comparison of the amino-terminal RNA-binding region of PKR from diverse species shows that the serine and threonine residues are conserved in the first RBM1 and not in the second RBM2 of PKR from diverse species, or among RBMs from other proteins (Fig. 1B and Supplementary Figure S1)

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Summary

Introduction

Control of enzyme activity by phosphorylation of protein hydroxyls is universal in biology. This shows that substitution of an alanine at positions 33 or 42 within the RNA-binding domain has a more appreciable effect on PKR auto-phosphorylation than the previously reported activating mutation within the kinase domain.

Results
Conclusion

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