Artificial intelligence for mechanistic understanding of hepatitis B virus
Chronic hepatitis B virus (HBV) persists through a compact proteome, deep reliance on host pathways, and a nuclear covalently closed circular DNA (cccDNA) reservoir that current antivirals rarely extinguish. This Mini Review synthesizes advances from 2020–2025 in which artificial intelligence (AI) augments mechanistic understanding of HBV rather than serving only predictive ends. We summarize (i) AI-enabled structural modeling that clarifies polymerase priming and HBx architecture; (ii) physics-informed and multiscale inference that links sparse measurements to replication and cccDNA kinetics; (iii) sequence-based learners that expose non-random host-genome integration contexts and mutational constellations associated with immune tolerance or escape; (iv) network-aware analyses that prioritize host dependencies and connect CRISPR perturbations to virus–host modules governing cccDNA transcriptional control; and (v) AI-assisted antiviral discovery that couples virtual screening with mechanism-anchored interpretation (e.g., capsid assembly modulators). Across these domains, AI sharpens hypotheses by mapping viral mutations and host factors to discrete steps of the life cycle, quantitatively elevating high-leverage processes such as nucleocapsid recycling and cccDNA silencing, and guiding structure- or phenotype-guided intervention design. We also outline practical constraints—data sparsity, cross-cohort heterogeneity, and interpretability—and propose priorities that couple computation and experiment: mechanism-aware gray-box models, causal and spatially resolved analyses, calibrated uncertainty and benchmarking across genotypes, and active-learning loops that maximize information gained per experiment. Framed this way, AI emerges as a mechanism-aware partner to experimental virology, accelerating routes toward durable functional cure through eradication or stable transcriptional silencing of cccDNA.
- Research Article
165
- 10.1016/j.jhep.2010.12.030
- Jan 14, 2011
- Journal of Hepatology
Natural history of chronic hepatitis B in Euro-Mediterranean and African Countries
- Research Article
4
- 10.1097/mpg.0b013e31804a85e1
- Jul 1, 2007
- Journal of Pediatric Gastroenterology and Nutrition
The Role of Viral‐specific Immune Responses on the Outcome of Chronic Hepatitis B (HBV) Infection in Children: New Insights Into Immunopathology
- Research Article
3309
- 10.1053/j.gastro.2011.12.061
- Apr 23, 2012
- Gastroenterology
Most cases of hepatocellular carcinoma (HCC) are associated with cirrhosis related to chronic hepatitis B virus (HBV) or hepatitis C virus (HCV) infection. Changes in the time trends of HCC and most variations in its age-, sex-, and race-specific rates among different regions are likely to be related to differences in hepatitis viruses that are most prevalent in a population, the timing of their spread, and the ages of the individuals the viruses infect. Environmental, host genetic, and viral factors can affect the risk of HCC in individuals with HBV or HCV infection. This review summarizes the risk factors for HCC among HBV- or HCV-infected individuals, based on findings from epidemiologic studies and meta-analyses, as well as determinants of patient outcome and the HCC disease burden, globally and in the United States.
- Discussion
8
- 10.1053/j.gastro.2003.05.011
- Dec 1, 2003
- Gastroenterology
Occult HBV infection—both hidden and mysterious
- Front Matter
28
- 10.1016/j.jhep.2006.07.001
- Jul 12, 2006
- Journal of Hepatology
HBeAg-negative chronic hepatitis B: From obscurity to prominence
- Research Article
62
- 10.3390/jcm11051349
- Mar 1, 2022
- Journal of clinical medicine
Despite a preventive vaccine being available, more than 250 million people suffer from chronic hepatitis B virus (HBV) infection, a major cause of liver disease and HCC. HBV infects human hepatocytes where it establishes its genome, the cccDNA with chromosomal features. Therapies controlling HBV replication exist; however, they are not sufficient to eradicate HBV cccDNA, the main cause for HBV persistence in patients. Core protein is the building block of HBV nucleocapsid. This viral protein modulates almost every step of the HBV life cycle; hence, it represents an attractive target for the development of new antiviral therapies. Capsid assembly modulators (CAM) bind to core dimers and perturb the proper nucleocapsid assembly. The potent antiviral activity of CAM has been demonstrated in cell-based and in vivo models. Moreover, several CAMs have entered clinical development. The aim of this review is to summarize the mechanism of action (MoA) and the advancements in the clinical development of CAMs and in the characterization of their mod of action.
- Research Article
32
- 10.1016/j.jhep.2004.11.014
- Nov 23, 2004
- Journal of Hepatology
Management of patients with hepatitis B virus-induced cirrhosis
- Research Article
136
- 10.1016/j.jhep.2010.12.031
- Jan 14, 2011
- Journal of Hepatology
Therapeutic vaccines and immune-based therapies for the treatment of chronic hepatitis B: Perspectives and challenges
- Front Matter
41
- 10.1016/s0168-8278(02)00039-9
- Feb 21, 2002
- Journal of Hepatology
Clinical utility in quantifying serum HBV DNA levels using PCR assays
- Front Matter
3
- 10.1053/j.gastro.2018.01.011
- Jan 11, 2018
- Gastroenterology
NVR 3-778 Plus Pegylated Interferon-α Treatment for Chronic Hepatitis B Viral Infections: Could 1 + 1 = 3?
- Research Article
18
- 10.1080/17460441.2023.2239701
- Jul 30, 2023
- Expert opinion on drug discovery
Introduction The burden of chronic hepatitis B virus (HBV) results in almost a million deaths per year. The most common treatment for chronic hepatitis B infection is long-term nucleoside analogs (NUC) or one-year interferon-alpha (pegylated or non-pegylated) therapy before or after NUC therapy. Unfortunately, these therapies rarely result in HBV functional cure because they do not eradicate HBV from the nucleus of the hepatocytes, where the covalently closed circular DNA (cccDNA) is formed and/or where the integrated HBV DNA persists in the host genome. Hence, the search continues for novel antiviral therapies that target different steps of the HBV replication cycle to cure chronically infected HBV individuals and eliminate HBV from the liver reservoirs. Areas covered The authors focus on capsid assembly modulators (CAMs). These molecules are unique because they impact not only one but several steps of HBV viral replication, including capsid assembly, capsid trafficking into the nucleus, reverse transcription, pre-genomic RNA (pgRNA), and polymerase protein co-packaging. Expert opinion Mono- or combination therapy, including CAMs with other HBV drugs, may potentially eliminate hepatitis B infections. Nevertheless, more data on their potential effect on HBV elimination is needed, especially when used daily for 6–12 months.
- Research Article
9
- 10.1128/jvi.00722-23
- Sep 27, 2023
- Journal of Virology
Chronic hepatitis B is the most important cause of liver cancer worldwide and affects more than 290 million people. Current treatments are mostly suppressive and rarely lead to a cure. Therefore, there is a need for novel and curative drugs that target the host or the causative agent, hepatitis B virus itself. Capsid assembly modulators are an interesting class of antiviral molecules that may one day become part of curative treatment regimens for chronic hepatitis B. Here we explore the characteristics of a particularly interesting subclass of capsid assembly modulators. These so-called non-HAP CAM-As have intriguing properties in cell culture but also clear virus-infected cells from the mouse liver in a gradual and sustained way. We believe they represent a considerable improvement over previously reported molecules and may one day be part of curative treatment combinations for chronic hepatitis B.
- Research Article
228
- 10.1053/j.gastro.2005.03.009
- Jun 1, 2005
- Gastroenterology
Intrahepatic Hepatitis B Virus Covalently Closed Circular DNA Can Be a Predictor of Sustained Response to Therapy
- Research Article
207
- 10.1016/j.jhep.2005.02.005
- Feb 24, 2005
- Journal of Hepatology
The role of hepatitis B virus integrations in the pathogenesis of human hepatocellular carcinoma
- Front Matter
14
- 10.1016/j.jhep.2008.12.005
- Dec 17, 2008
- Journal of Hepatology
Genetic variability of hepatitis B virus and response to antiviral treatments: Searching for a bigger picture