Abstract

Besides genetic polymorphisms and environmental factors, the intestinal microbiota is an important factor in the etiology of Crohn’s disease (CD). Among microbiota alterations, a particular pathotype of Escherichia coli involved in the pathogenesis of CD abnormally colonizes the intestinal mucosa of patients: the adherent-invasive Escherichia coli (AIEC) pathobiont bacteria, which have the abilities to adhere to and to invade intestinal epithelial cells (IECs), as well as to survive and replicate within macrophages. AIEC have been the subject of many studies in recent years to unveil some genes linked to AIEC virulence and to understand the impact of AIEC infection on the gut and consequently their involvement in CD. In this review, we describe the lifestyle of AIEC bacteria within the intestine, from the interaction with intestinal epithelial and immune cells with an emphasis on environmental and genetic factors favoring their implantation, to their lifestyle in the intestinal lumen. Finally, we discuss AIEC-targeting strategies such as the use of FimH antagonists, bacteriophages, or antibiotics, which could constitute therapeutic options to prevent and limit AIEC colonization in CD patients.

Highlights

  • Crohn’s disease (CD) and ulcerative colitis (UC) are inflammatory bowel disease (IBD) characterized by chronic inflammatory disorders of the gastrointestinal (GI) tract

  • Enterobacteria, members of the Proteobacteria phylum, can represent up to 100% of the aeroanaerobic microbiota associated to the ileal mucosa in CD, and particular adherent strains of Escherichia coli have been identified in the inflamed ileal and colonic mucosa of CD patients [21,22,23,24,25,26,27]

  • Many research groups focus their work to better understand how adherent-invasive E. coli (AIEC) bacteria evolved from commensal E. coli strain, how AIEC bacteria interact with the complex microenvironment of the digestive tract, how they take advantage of specific environmental conditions, how they interact with intestinal epithelial cells (IECs), and how they subvert host defense to colonize intestinal mucosa of CD patients

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Summary

Introduction

Crohn’s disease (CD) and ulcerative colitis (UC) are inflammatory bowel disease (IBD) characterized by chronic inflammatory disorders of the gastrointestinal (GI) tract. Enterobacteria, members of the Proteobacteria phylum, can represent up to 100% of the aeroanaerobic microbiota associated to the ileal mucosa in CD, and particular adherent strains of Escherichia coli have been identified in the inflamed ileal and colonic mucosa of CD patients [21,22,23,24,25,26,27] Both abilities of these strains to adhere to and to invade intestinal epithelial cells (IECs) as to survive and to replicate within macrophages led to the definition of a new pathogenic group: the adherent-invasive E. coli (AIEC) [21,22,28]. Based on the recent literature, this review will discuss the new therapeutic strategies which could be developed to limit AIEC overgrowth in CD patients and ongoing clinical trials targeting AIEC bacteria

The Challenging Identification of AIEC Bacteria in CD Patients
Mucus Crossing
Flagellum Regulation
Resistance to Antimicrobial Peptides
Type 1 pili-CEACAM6 Interaction
ChiA-Chitinase 3-Like-1 Interaction
AIEC-M-cells Interaction
Invasion of IECs by AIEC Bacteria
Effects of AIEC on Epithelial Barrier Function
Effects of AIEC on Host Glycosylation
Induction of Fibrosis by AIEC
Through the TLR Pathway
Through Survival and Replication within Macrophages
Through the Release of Exosomes
Role of Autophagy in the Control of AIEC Replication
Role of micro-RNAs in the Control of AIEC Replication
Role of SUMOylation in the Control of AIEC Replication
AIEC in the Lumen
Regulation of Virulence Genes by Luminal Molecules
Influence of the Diet on the Ability of AIEC to Colonize in Intestinal Mucosa
Influence of the Nutrients and Carbon Sources on the Fitness of AIEC
Impact of AIEC Infection on Microbiota Composition
Targeting AIEC
Probiotics
Inhibition of AIEC Adhesion Using Chemical Compounds
Other Strategies
Antibiotics
Use of Colicin
Phagotherapy
Activation of Autophagy
Nutritional Interventions
Flagellin Vaccination
Findings
Future Directions

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