ACMSD methylation in peripheral blood is associated with dynamic functional connectivity pattern in adolescent MDD patients

Background and purposeAsymptomatic carotid stenosis (ACS) is an independent risk factor for ischemic stroke and vascular cognitive impairment, affecting cognitive function across multiple domains. This study aimed to explore differences in static and dynamic intrinsic functional connectivity and temporal dynamics between patients with ACS and those without carotid stenosis.MethodsWe recruited 30 patients with unilateral moderate-to-severe (stenosis ≥ 50%) ACS and 30 demographically-matched healthy controls. All participants underwent neuropsychological testing and 3.0T brain MRI scans. Resting-state functional MRI (rs-fMRI) was used to calculate both static and dynamic functional connectivity. Dynamic independent component analysis (dICA) was employed to extract independent circuits/networks and to detect time-frequency modulation at the circuit level. Further imaging-behavior associations identified static and dynamic functional connectivity patterns that reflect cognitive decline.ResultsACS patients showed altered functional connectivity in multiple brain regions and networks compared to controls. Increased connectivity was observed in the inferior parietal lobule, frontal lobe, and temporal lobe. dICA further revealed changes in the temporal frequency of connectivity in the salience network. Significant differences in the temporal variability of connectivity were found in the fronto-parietal network, dorsal attention network, sensory-motor network, language network, and visual network. The temporal parameters of these brain networks were also related to overall cognition and memory.ConclusionsThese results suggest that ACS involves not only changes in the static large-scale brain network connectivity but also dynamic temporal variations, which parallel overall cognition and memory recall.

This study aims to investigate the altered patterns of dynamic functional network connectivity (dFNC) between deficit schizophrenia (DS) and non-deficit schizophrenia (NDS), and further explore the associations with cognitive impairments. 70 DS, 91 NDS, and 120 matched healthy controls (HCs) were enrolled. The independent component analysis was used to segment the whole brain. The fMRI brain atlas was used to identify functional networks, and the dynamic functional connectivity (FC) of each network was detected. Correlation analysis was used to explore the associations between altered dFNC and cognitive functions. Four dynamic states were identified. Compared to NDS, DS showed increased FC between sensorimotor network and default mode network in state 1 and decreased FC within auditory network in state 4. Additionally, DS had a longer mean dwell time of state 2 and a shorter one in state 3 compared to NDS. Correlation analysis showed that fraction time and mean dwell time of states were correlated with cognitive impairments in DS. This study demonstrates the distinctive altered patterns of dFNC between DS and NDS patients. The associations with impaired cognition provide specific neuroimaging evidence for the pathogenesis of DS.

Alterations in dynamic brain functional connectivity (dFC) have been observed in epilepsy, few studies have directly compared the dynamic functional network connectivity (dFNC) patterns between patients with self-limited epilepsy with centrotemporal spikes (SeLECTS) and those with childhood absence epilepsy (CAE). This study aimed to explore differences in dFNC between these two epilepsy types and investigate how these patterns relate to clinical features. Resting-state functional MRI data were collected from 34 SeLECTS patients, 22 CAE patients, and 32 healthy controls. Independent component analysis (ICA) was combined with a sliding-window technique to examine characteristics of dynamic FNC, including state transitions, connectivity strength, and temporal properties. Three recurring dFNC states were identified. SeLECTS patients spent significantly more time in a highly flexible state characterized by strong network integration, whereas CAE patients more frequently occupied a state marked by weak inter-network connectivity. Furthermore, SeLECTS patients showed greater variability in dFNC states over time. Certain clinical factors-particularly seizure frequency-were found to correlate with specific dFNC states, most notably in the SeLECTS group. The study highlights distinct dynamic connectivity patterns between SeLECTS and CAE patients, suggesting that these two epilepsy types involve different network-level mechanisms. These findings contribute to a deeper understanding of epilepsy subtypes and may inform future diagnostic and treatment strategies. This study identifies distinct dFNC patterns in two common childhood epilepsies: SeLECTS and CAE. It demonstrates the value of dynamic resting-state brain network analysis in pediatric epilepsy. These findings provide new neuroimaging biomarkers for early classification of epilepsy subtypes. Results may contribute to the development of personalized diagnosis and treatment strategies in children with epilepsy.

Human affective experience varies along the dimensions of valence (positivity or negativity) and arousal (high or low activation). It remains unclear how these dimensions are represented in the brain and whether the representations are shared across different individuals and diverse situational contexts. In this study, we first utilized two publicly available functional MRI datasets of participants watching movies to build predictive models of moment-to-moment emotional arousal and valence from dynamic functional brain connectivity. We tested the models by predicting emotional arousal and valence both within and across datasets. Our results revealed a generalizable arousal representation characterized by the interactions between multiple large-scale functional networks. The arousal representation generalized to two additional movie-watching datasets with different participants viewing different movies. In contrast, we did not find evidence of a generalizable valence representation. Taken together, our findings reveal a generalizable representation of emotional arousal embedded in patterns of dynamic functional connectivity, suggesting a common underlying neural signature of emotional arousal across individuals and situational contexts. We have made our model and analysis scripts publicly available to facilitate its use by other researchers in decoding moment-to-moment emotional arousal in novel datasets, providing a new tool to probe affective experience using fMRI.

Functional brain network has been widely studied in many previous work for brain disorder diagnosis and brain network analysis. However, most previous work focus on static dynamic brain network research. Lots of recent work reveals that the brain shows dynamic activity even in resting state. Such dynamic brain functional connectivity reveals discriminative patterns for identifying many brain disorders. Current sliding window based dynamic brain connectivity framework are not easy to be applied to real clinical applications due to many issues: First, how to set up the optimal sliding window size and how to determine the threshold for the brain connectivity patterns. Secondly, how to represent the high dimensional dynamic brain connectivity pattern in a low dimensional representations for diagnosis purpose. Last, how to deal with the different length dynamic brain network patterns especially when the raw data are of different length. In order to address all those above issues, we proposed a new framework, which employs multiple scale sliding windows and automatically learns a sparse and low ran dynamic brain functional connectivity patterns from raw fMRI data. Furthermore, we are able to measure different length dynamic brain functional connectivity patterns in an equal space by learning a sparse coded convolutional filters. We have evaluated our method with state of the art dynamic brain network methods and the results demonstrated the strong potential of our methods for brain disorder diagnosis in real clinical applications.

BackgroundAlterations in static and dynamic functional connectivity during resting state have been widely reported in major depressive disorder (MDD). The objective of this study was to compare the performances of whole-brain dynamic and static functional connectivity combined with machine learning approach in differentiating MDD patients from healthy controls at the individual subject level. Given the dynamic nature of brain activity, we hypothesized that dynamic connectivity would outperform static connectivity in the classification.MethodsSeventy-one MDD patients and seventy-one well-matched healthy controls underwent resting-state functional magnetic resonance imaging scans. Whole-brain dynamic and static functional connectivity patterns were calculated and utilized as classification features. Linear kernel support vector machine was employed to design the classifier and a leave-one-out cross-validation strategy was used to assess classifier performance.ResultsExperimental results of dynamic functional connectivity-based classification showed that MDD patients could be discriminated from healthy controls with an excellent accuracy of 100% irrespective of whether or not global signal regression (GSR) was performed (permutation test with P < 0.0002). Brain regions with the most discriminating dynamic connectivity were mainly and reliably located within the default mode network, cerebellum, and subcortical network. In contrast, the static functional connectivity-based classifiers exhibited unstable classification performances, i.e., a low accuracy of 38.0% without GSR (P = 0.9926) while a high accuracy of 96.5% with GSR (P < 0.0002); moreover, there was a considerable variability in the distribution of brain regions with static connectivity most informative for classification.ConclusionThese findings suggest the superiority of dynamic functional connectivity in machine learning-based classification of depression, which may be helpful for a better understanding of the neural basis of MDD as well as for the development of effective computer-aided diagnosis tools in clinical settings.

Potential changes in patterns of dynamic functional network connections at the cerebellar-cerebral level in pontine infarction (PI) patients remain unclear. The study aimed to investigate the abnormal patterns of dynamic functional connectivity (dFC) between the cerebellar subregions within networks and regions of the cerebral cortex in patients with PI. Forty-six chronic left pontine infarction (LPI), 32 chronic right pontine infarction (RPI), and 50 healthy controls (HCs) were recruited to undergo resting-state fMRI scans. Cerebellar-cerebral dFC was characterized using the sliding window method and seed-based connectivity analyses. Correlations between altered dFC values and clinical variables (The Rey Auditory Verbal Learning Test and Flanker task) in PI patients and healthy controls were investigated. Compared with HCs, the PI groups showed significantly aberrant cerebellar-cerebral dFC between cerebellar subregions within networks and supratentorial cerebral cortex, including executive, default-mode, and motor networks. Furthermore, Correlation analysis showed a decoupling between abnormal dFC and cognitive functions in PI patients. These findings indicate that PI patients are accompanied by damage to cerebellar subregions within networks and cerebellar-cerebral pathways, which may provide a potential target for treatment or an indication of therapeutic efficacy.

This study examined the statistical underpinnings of dynamic functional connectivity in mental disorders, using resting-state fMRI signals. Notably, there has been an absence of research demonstrating the non-stationarity of the empirical probability distribution of functional connectivity. This gap has prompted debate on the existence of dynamic functional connectivity, leading skeptics to question its relevance and the reliability of research findings. Our aim was to fill this gap by conducting a comprehensive empirical distribution analysis of functional connectivity, using Pearson's correlation as a measure. We conducted our analysis on a set of preprocessed resting-state fMRI samples obtained from 186 subjects selected from the UCLA Consortium for Neuropsychiatric Phenomics dataset. Departing from conventional methods that aggregated signals over voxels within a region of interest, our approach leveraged individual voxel signals. Specifically, our approach offered a precise characterization of the empirical probability distribution of resting-state fMRI signals by evaluating the temporal variations and non-stationarity in dynamic functional connectivity, as measured by Pearson's correlation. Our study investigated functional connectivity patterns across 49 regions of interest, comparing healthy control subjects with patients diagnosed with ADHD, bipolar disorder, and schizophrenia. Our analysis revealed that (1) the empirical distribution of the correlation coefficient exhibited non-stationarity, (2) the beta distribution was an accurate approximation of the exact correlation coefficient distribution, and (3) the empirical distribution of means derived from the fitted beta distributions, unraveled distinctive dynamic functional connectivity patterns with potential as biomarkers associated with different mental disorders. A key contribution of our study was the presentation of the first comprehensive empirical distribution analysis of dynamic functional connectivity, thus providing compelling evidence for its existence. Overall, our study presented an innovative statistical approach that advances our understanding of the dynamic nature of functional connectivity patterns derived from resting-state fMRI. Our examination of the empirical distribution of dynamic functional connectivity provided solid evidence supporting its existence. The distinctive dynamic functional connectivity patterns we identified across various mental disorders hold promise as potential biomarkers for further development.

Although migraine and persistent post-traumatic headache often share phenotypic characteristics, few studies have interrogated the pathophysiological differences underlying these headache types. While there is now some indication of differences in brain structure between migraine and persistent post-traumatic headache, differences in brain function have not been adequately investigated. The objective of this study was to compare static and dynamic functional connectivity patterns in migraine versus persistent post-traumatic headache using resting-state magnetic resonance imaging. This case-control study interrogated the static functional connectivity and dynamic functional connectivity patterns of 59 a priori selected regions of interest involved in pain processing. Pairwise connectivity (region of interest to region of interest) differences between migraine (n = 33) and persistent post-traumatic headache (n = 44) were determined and compared to healthy controls (n = 36) with ANOVA and subsequent t-tests. Pearson partial correlations were used to explore the relationship between headache burden (headache frequency; years lived with headache) and functional connectivity and between pain intensity at the time of imaging and functional connectivity for migraine and persistent post-traumatic headache groups, separately. Significant differences in static functional connectivity between migraine and persistent post-traumatic headache were found for 17 region pairs that included the following regions of interest: Primary somatosensory, secondary somatosensory, posterior insula, hypothalamus, anterior cingulate, middle cingulate, temporal pole, supramarginal gyrus, superior parietal, middle occipital, lingual gyrus, pulvinar, precuneus, cuneus, somatomotor, ventromedial prefrontal cortex, and dorsolateral prefrontal cortex. Significant differences in dynamic functional connectivity between migraine and persistent post-traumatic headache were found for 10 region pairs that included the following regions of interest: Secondary somatosensory, hypothalamus, middle cingulate, temporal pole, supramarginal gyrus, superior parietal, lingual gyrus, somatomotor, precentral, posterior cingulate, middle frontal, fusiform gyrus, parieto-occiptal, and amygdala. Although there was overlap among the regions demonstrating static functional connectivity differences and those showing dynamic functional connectivity differences between persistent post-traumatic headache and migraine, there was no overlap in the region pair functional connections. After controlling for sex and age, there were significant correlations between years lived with headache with static functional connectivity of the right dorsolateral prefrontal cortex with the right ventromedial prefrontal cortex in the migraine group and with static functional connectivity of right primary somatosensory with left supramarginal gyrus in the persistent post-traumatic headache group. There were significant correlations between headache frequency with static functional connectivity of left secondary somatosensory with right cuneus in the migraine group and with static functional connectivity of left middle cingulate with right pulvinar and right posterior insula with left hypothalamus in the persistent post-traumatic headache group. Dynamic functional connectivity was significantly correlated with headache frequency, after controlling for sex and age, in the persistent post-traumatic headache group for one region pair (right middle cingulate with right supramarginal gyrus). Dynamic functional connectivity was correlated with pain intensity at the time of imaging for the migraine cohort for one region pair (right posterior cingulate with right amygdala). Resting-state functional imaging revealed static functional connectivity and dynamic functional connectivity differences between migraine and persistent post-traumatic headache for regions involved in pain processing. These differences in functional connectivity might be indicative of distinctive pathophysiology associated with migraine versus persistent post-traumatic headache.

Previous resting-state functional magnetic resonance imaging studies on intracerebral hemorrhage patients have focused more on the static characteristics of brain activity, while the time-varying effects during scanning have received less attention. Therefore, the current study aimed to explore the dynamic functional network connectivity changes of intracerebral hemorrhage patients. Using independent component analysis, the sliding window approach, and the k-means clustering analysis method, different dynamic functional network connectivity states were detected from resting-state functional magnetic resonance imaging data of 37 intracerebral hemorrhage patients and 44 healthy controls. The inter-group differences in dynamic functional network connectivity patterns and temporal properties were investigated, followed by correlation analyses between clinical scales and abnormal functional indexes. Ten resting-state networks were identified, and the dynamic functional network connectivity matrices were clustered into four different states. The transition numbers were decreased in the intracerebral hemorrhage patients compared with healthy controls, which was associated with trail making test scores in patients. The cerebellar network and executive control network connectivity in State 1 was reduced in patients, and this abnormal dynamic functional connectivity was positively correlated with the animal fluency test scores of patients. The current study demonstrated the characteristics of dynamic functional network connectivity in intracerebral hemorrhage patients and revealed that abnormal temporal properties and functional connectivity may be related to the performance of different cognitive domains after ictus. These results may provide new insights into exploring the neurocognitive mechanisms of intracerebral hemorrhage.

It is well known that the blood oxygen level-dependent (BOLD) signal measured by functional magnetic resonance imaging (fMRI) is influenced-in addition to neuronal activity-by fluctuations in physiological signals, including arterial CO2, respiration and heart rate/heart rate variability (HR/HRV). Even spontaneous fluctuations of the aforementioned physiological signals have been shown to influence the BOLD fMRI signal in a regionally specific manner. Related to this, estimates of functional connectivity between different brain regions, performed when the subject is at rest, may be confounded by the effects of physiological signal fluctuations. Moreover, resting functional connectivity has been shown to vary with respect to time (dynamic functional connectivity), with the sources of this variation not fully elucidated. In this context, we examine the relation between dynamic functional connectivity patterns and the time-varying properties of simultaneously recorded physiological signals (end-tidal CO2 and HR/HRV) using resting-state fMRI measurements from 12 healthy subjects. The results reveal a modulatory effect of the aforementioned physiological signals on the dynamic resting functional connectivity patterns for a number of resting-state networks (default mode network, somatosensory, visual). By using discrete wavelet decomposition, we also show that these modulation effects are more pronounced in specific frequency bands.

General intelligence, referred to as g, is hypothesized to emerge from the capacity to dynamically and adaptively reorganize macroscale brain connectivity. Temporal reconfiguration can be assessed using dynamic functional connectivity (dFC), which captures the propensity of brain connectivity to transition between a recurring repertoire of distinct states. Conventional dFC metrics commonly focus on categorical state switching frequencies which do not fully assess individual variation in continuous connectivity reconfiguration. Here, we supplement frequency measures by quantifying within-state connectivity consistency, dissimilarity between connectivity across states, and conformity of individual connectivity to group-average state connectivity. We utilized resting-state functional magnetic resonance imaging (fMRI) data from the large-scale Human Connectome Project and applied data-driven multivariate Partial Least Squares Correlation to explore emergent associations between dynamic network properties and cognitive ability. Our findings reveal a positive association between g and the stable maintenance of states characterized by distinct connectivity between higher-order networks, efficient reconfiguration (i.e., minimal connectivity changes during transitions between similar states, large connectivity changes between dissimilar states), and ability to sustain connectivity close to group-average state connectivity. This hints at fundamental properties of brain–behavior organization, suggesting that general cognitive processing capacity may be supported by the ability to efficiently reconfigure between stable and population-typical connectivity patterns.

Characterizing brain dynamic functional connectivity (dFC) patterns from functional Magnetic Resonance Imaging (fMRI) data is of paramount importance in imaging neuroscience and medicine. Recently, many graph neural network (GNN) models, combined with transformers or recurrent neural networks (RNNs), have shown great potential for modeling the dFC patterns. However, these methods face challenges in effectively characterizing the modularity organization of brain networks and capturing varying dFC state patterns. To address these limitations, we propose dFCExpert, a novel method designed to learn robust representations of dFC patterns in fMRI data with modularity experts and state experts. Specifically, the modularity experts optimize multiple experts to characterize the brain modularity organization during graph feature learning process by combining GNN and mixture of experts (MoE), with each expert focusing on brain nodes within the same functional network module. The state experts aggregate temporal dFC features into a set of distinctive connectivity states using a soft prototype clustering method, providing insight into how these states support diverse brain functions and how they vary across brain conditions. Experiments on three large-scale fMRI datasets have demonstrated the superiority of our method over existing alternatives. The learned dFC representations not only enhance interpretability but also hold promise for advancing our understanding of brain function across a range of conditions, including development, sex difference, and Autism Spectrum Disorder. Our code is publicly available at MLDataAnalytics/dFCExpert.

Characterizing brain dynamic functional connectivity (dFC) patterns from functional Magnetic Resonance Imaging (fMRI) data is of paramount importance in imaging neuroscience and medicine. Recently, many graph neural network (GNN) models, combined with transformers or recurrent neural networks (RNNs), have shown great potential for modeling the dFC patterns. However, these methods face challenges in effectively characterizing the modularity organization of brain networks and capturing varying dFC state patterns. To address these limitations, we propose dFCExpert, a novel method designed to learn robust representations of dFC patterns in fMRI data with modularity experts and state experts. Specifically, the modularity experts optimize multiple experts to characterize the brain modularity organization during graph feature learning process by combining GNN and mixture of experts (MoE), with each expert focusing on brain nodes within the same functional network module. The state experts aggregate temporal dFC features into a set of distinctive connectivity states using a soft prototype clustering method, providing insight into how these states support diverse brain functions and how they vary across brain conditions. Experiments on three large-scale fMRI datasets have demonstrated the superiority of our method over existing alternatives. The learned dFC representations not only enhance interpretability but also hold promise for advancing our understanding of brain function across a range of conditions, including development, sex difference, and Autism Spectrum Disorder. Our code is publicly available at MLDataAnalytics/dFCExpert.

Alcohol use disorder is associated with damaging effects to the brain. This study aimed to examine differences in static and dynamic intrinsic functional connectivity patterns in individuals with a history of alcohol use disorder in comparison to those with no history of alcohol abuse. A total of 55 participants consisting of 23 patients and 32 control individuals underwent neuropsychological assessments and resting-state functional magnetic resonance imaging on a 3 Tesla MRI scanner. Differences in functional connectivity between the two groups were determined using static and dynamic independent component analysis. Differences in static functional connectivity between the two groups were identified in the default mode network, attention network, frontoparietal network, frontal cortical network and cerebellar network. Furthermore, the analyses revealed specific differences in the dynamic temporal characteristics of functional connectivity between the two groups of participants, in a cluster involving key regions in reward, sensorimotor and frontal cortical functional networks, with some connections correlating with the length of sobriety and some others with the severity of drinking. The findings altogether suggest dysregulation in the intrinsic connectivity of cortico-basal ganglia-thalamo-cortical loops that may reflect persistent alcohol use disorder-related network abnormalities, compensatory recovery-related processes whereby additional neural resources are recruited to achieve normal levels of performance, or a predisposition toward developing alcohol use disorder.