Abstract

In the presence of glycoproteins, bacterial and yeast biofilms are hypothesized to expand by sliding motility. This involves a sheet of cells spreading as a unit, facilitated by cell proliferation and weak adhesion to the substratum. In this paper, we derive an extensional flow model for biofilm expansion by sliding motility to test this hypothesis. We model the biofilm as a two-phase (living cells and an extracellular matrix) viscous fluid mixture, and model nutrient depletion and uptake from the substratum. Applying the thin-film approximation simplifies the model, and reduces it to one-dimensional axisymmetric form. Comparison with Saccharomyces cerevisiae mat formation experiments reveals good agreement between experimental expansion speed and numerical solutions to the model with parameters estimated from experiments. This confirms that sliding motility is a possible mechanism for yeast biofilm expansion. Having established the biological relevance of the model, we then demonstrate how the model parameters affect expansion speed, enabling us to predict biofilm expansion for different experimental conditions. Finally, we show that our model can explain the ridge formation observed in some biofilms. This is especially true if surface tension is low, as hypothesized for sliding motility.

Highlights

  • Micro-organisms can form colonies with fascinating and complex spatio-temporal patterns

  • We were interested in the role of sliding motility and nutrient limitation, features hypothesized to be relevant to mat formation experiments of the budding yeast S. cerevisiae

  • We systematically reduced the model to a one-dimensional axisymmetric form by employing an extensional flow thin-film reduction

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Summary

Introduction

Micro-organisms can form colonies with fascinating and complex spatio-temporal patterns. As these colonies are readily grown in experiments, bacteria and fungi are often used as model organisms to investigate the mechanisms of pattern formation in large collections of cells. Murray [1] proposed a more general mechanochemical theory, where chemical signals combine with mechanical interactions between cells and their environment to give rise to spatial patterns. As these mechanisms can interact in a complex manner, pattern formation in micro-organisms continues to be an active field of research

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