A taxogenomic view of the genus Torulaspora: an expansion from ten to twenty-two species.
The yeast genus Torulaspora (subphylum Saccharomycotina, family Saccharomycetaceae) is mostly known from its type species, T. delbrueckii, a frequent colonizer of wine and sourdough bread fermentations. The genus currently contains 10 species that are typically found in various natural terrestrial environments in temperate and tropical climates. Here we employ taxogenomic analyses to investigate a large collection of Torulaspora strains obtained in multiple surveys we carried out in Asia, Australasia, North America, South America, and Europe, and to which we added several strains maintained in culture collections. Our analyses detected twelve novel species that are formally described here, thereby more than doubling the species diversity of Torulaspora. We also sketch a genotype-phenotype map for the genus and show how the complex relationship between key genes and the physiological traits they control both between and within species. This remarkable increase in the number of species in the genus Torulaspora highlights how limited the current inventory of fungal taxa is. It also shows how integrated taxogenomic approaches can foster the assessment of species circumscriptions in fungi. Citation: Silva MR, Paraíso F, Al-Oboudi J, Abegg M, Aires A, Barros KO, Brito PH, Jarzyna M, Sylvester K, Langdon QK, Opulente DA, Carriconde F, Fell JW, Hofmann TA, Lachance M-A, Legras J-L, Libkind D, Pontes A, Gonçalves P, Rosa CA, Groenewald M, Hittinger CT, Sampaio JP (2025). A taxogenomic view of the genus Torulaspora: an expansion from ten to twenty-two species. Persoonia 54: 265-283. doi: 10.3114/persoonia.2025.54.08.
3922
- 10.1038/s41467-018-07641-9
- Nov 30, 2018
- Nature Communications
22120
- 10.1089/cmb.2012.0021
- Apr 16, 2012
- Journal of Computational Biology
7954
- 10.1371/journal.pone.0112963
- Nov 19, 2014
- PLoS ONE
14
- 10.1002/yea.3857
- May 27, 2023
- Yeast (Chichester, England)
54
- 10.1016/j.lwt.2019.03.028
- Mar 11, 2019
- LWT
46
- 10.1007/s10482-020-01480-9
- Oct 13, 2020
- Antonie van Leeuwenhoek
4
- 10.1099/ijsem.0.005629
- Dec 15, 2022
- International Journal of Systematic and Evolutionary Microbiology
14
- 10.1038/s41598-018-34122-2
- Oct 24, 2018
- Scientific Reports
18
- 10.3389/fmicb.2021.679894
- Jul 21, 2021
- Frontiers in Microbiology
35
- 10.1371/journal.pone.0210792
- Jan 30, 2019
- PloS one
- Research Article
- 10.54026/aart/1074
- Jul 24, 2024
- Archives of Agriculture Research and Technology (AART)
T he largest agricultural areas in the world are in North America, Euro-Asia, and Central South America. However, agriculture in tropical and temperate climates is very different, mainly because of the environmental conditions. Unlike in temperate climates, there are not four seasons in the tropics. The tropics have only two seasons, rainy and dry, with plants f lowering all year round because air temperatures are not too low in the winter, and crops can grow during this season; thus, some crops may have three cycles per year in the tropics. In most temperate climates, there is only one crop cycle per year due to low winter temperatures, but the yield can be the highest. The low temperatures of a temperate climate, below 0°C, allow soils to be shallow, with high organic matter content and fertility because soil microbial activity and lixiviation are arrested at such temperatures, and organic matter is less degraded than in tropical soils where soil microorganisms and lixiviation continue throughout the year. As a result, yields of major crops in temperate climates are the highest in the world, confirming the efficiency of temperate agriculture, even with only one crop cycle per year. On the other hand, in tropical climates, yields are lower, but crops can be grown several times a year, thus increasing the annual production.
- Research Article
- 10.1111/jbi.15031
- Nov 5, 2024
- Journal of Biogeography
ABSTRACTAimMost plant groups originated under tropical conditions, leading to the hypothesis of tropical niche conservatism, according to which species assemblages of a clade originating and diversifying in tropical climates are expected to have low phylogenetic diversity and dispersion in temperate climates because only few lineages have adapted to these novel conditions. The opposite may be expected for clades originating under temperate conditions, but this temperate niche conservatism hypothesis has not been tested for a broad temperature gradient including both tropical and arctic climates. Liverworts are thought to have originated in temperate climates, and may thus follow the pattern of temperate niche conservatism. Here, we test this hypothesis using regional liverwort floras across a nearly full temperature gradient from tropical through temperate to arctic climates in North America. In addition, we investigate whether temperature‐related variables and climate extreme variables play a more important role in determining phylogenetic structure of liverwort assemblages, compared to precipitation‐related variables and climate seasonality variables, respectively.LocationNorth America.TaxonLiverworts (Marchantiophyta).MethodsPhylogenetic diversity (measured as mean pairwise distance) and phylogenetic dispersion (measured as standardised effect size of mean pairwise distance) in liverworts in regional floras in North America were related to latitude and climatic variables. Variation partitioning analysis was used to assess the relative importance of temperature‐ versus precipitation‐related variables and of climate extremes versus seasonality on phylogenetic diversity and dispersion.ResultsPhylogenetic diversity and dispersion in liverworts is highest in temperate climates, compared to both tropical and arctic climates. Temperature‐related variables and climate extreme variables explained more variation in phylogenetic diversity and dispersion of liverwort assemblages than did precipitation‐related variables and climate seasonality variables, respectively.Main ConclusionsVariations in phylogenetic diversity and dispersion in liverworts along the latitudinal gradient in North America are consistent with the temperate niche conservatism hypothesis.
- Research Article
3
- 10.1111/epp.12832
- Apr 21, 2022
- EPPO Bulletin
PM 7/53 (2) <i>Liriomyza</i> spp.
- Research Article
220
- 10.1111/j.1523-1739.2008.01075.x
- Jan 14, 2009
- Conservation Biology
Plant-diversity hotspots on a global scale are well established, but smaller local hotspots within these must be identified for effective conservation of plants at the global and local scales. We used the distributions of endemic and endemic-threatened species of Myrtaceae to indicate areas of plant diversity and conservation importance within the Atlantic coastal forests (Mata Atlântica) of Brazil. We applied 3 simple, inexpensive geographic information system (GIS) techniques to a herbarium specimen database: predictive species-distribution modeling (Maxent); complementarity analysis (DIVA-GIS); and mapping of herbarium specimen collection locations. We also considered collecting intensity, which is an inherent limitation of use of natural history records for biodiversity studies. Two separate areas of endemism were evident: the Serra do Mar mountain range from Paraná to Rio de Janeiro and the coastal forests of northern Espírito Santo and southern Bahia. We identified 12 areas of approximately 35 km(2) each as priority areas for conservation. These areas had the highest species richness and were highly threatened by urban and agricultural expansion. Observed species occurrences, species occurrences predicted from the model, and results of our complementarity analysis were congruent in identifying those areas with the most endemic species. These areas were then prioritized for conservation importance by comparing ecological data for each.
- Research Article
- 10.1088/1361-6498/ac6046
- May 4, 2022
- Journal of Radiological Protection
Under the International Atomic Energy Agency (IAEA) Modelling and Data for Radiological Impact Assessments (MODARIA II) Programme, Working Group 4 activities included collating radionuclide transfer data from Japan following the Fukushima Daiichi Nuclear Power Plant accident and separately collating concentration ratio (CR) data for root uptake of radionuclides by crops grown in tropical and arid climates. In this paper, the newly compiled radiocaesium CR data for fruit from Japan, tropical and arid climates have been combined with the data originally compiled for the IAEA Technical Reports Series No. 472 (TRS 472) and additional data identified from the literature to produce an enhanced MODARIA II dataset of fruit radiocaesium CR values. Statistical analysis of the MODARIA II dataset by climate class (based on the Köppen–Geiger climate classification) indicated that the CR values for tropical climates were significantly higher (p < 0.05) than those for arid, temperate and cold climates. Statistical analysis of the MODARIA II dataset by soil group (based on soil texture) indicated that the CR values for coral sand soil (tropical climates only) and organic soil (temperate climates only) were significantly higher (p < 0.05) than those for the clay, loam and sand soil groups. Statistical analysis of the MODARIA II dataset by plant group (based on plant morphology) indicated that the CR values for non-woody trees (tropical climate bias) were significantly higher (p < 0.05) than those for herbaceous plants, shrubs and woody trees. Comparison of the MODARIA II dataset with original TRS 472 values showed only small changes in the fruit radiocaesium CR values for herbaceous plants and shrubs in temperate climates. There was a decrease in the CR values for woody trees in temperate climate across all soil groups. There was also a decrease in the CR values for tropical climates for all comparable soil groups.
- Research Article
56
- 10.1111/j.1600-0587.2009.06293.x
- Apr 1, 2010
- Ecography
The fourth biennial meeting of the International Biogeography Society (IBS) in Merida, Yucatan in January 2009 represented a double opportunity for Mexican biologists. First, it fostered the integration of the large community of Mexican biogeographers with the activities of the IBS. Second, the meeting allowed us to welcome a large number of delegates from distant parts of the world who were able to visit what has been considered an obligate destination for nature lovers and cultural tourists alike: the Yucatan peninsula. As Edward O. Wilson pointed out, besides economic power every country has two additional and important types of wealth: cultural and natural. Cultural richness is a naturally embedded component of the Mexican way of life.
- Research Article
46
- 10.1111/j.1365-2699.2007.01744.x
- Jun 29, 2007
- Journal of Biogeography
Early Holocene survival of megafauna in South America
- Research Article
10
- 10.1111/nph.14862
- Oct 19, 2017
- The New phytologist
Determinants of orchid species diversity in world islands.
- Research Article
45
- 10.1093/icb/icl046
- Oct 11, 2006
- Integrative and Comparative Biology
The expansion of Africanized honeybees (AHB) through the Americas has been one of the most spectacular and best-studied invasions by a biotype. African and European honeybees (EHB) hybridize, but with time, tropical and subtropical American environments have become dominated by AHB that exhibit only 20-35% genetic contribution from western European bees, and a predominance of African behavioral and physiological traits. EHB persist in temperate environments. Clines between AHB and EHB exist in ecotones of South and Central America, and are forming in North America. What individual-level genetic, behavioral and physiological traits determine the relative success of the AHB as an invader in the neotropics, and of the EHB in temperate areas? Preference for pollen versus nectar may be an important trait mediating these ecological trade-offs, as preference for pollen enhances nutrient intake and brood production for the AHB in the tropics, while a relative preference for nectar enhances honey stores and winter survival for EHB. AHB exhibit morphological (higher thorax-to-body mass ratios) and physiological (higher thorax-specific metabolic rates) traits that may improve flight capacity, dispersal, mating success and foraging intake. Enhanced winter longevity, linked with higher hemolymph vitellogenin levels, may be a key factor improving winter survival of EHB. Data from South America and distributions of AHB in the southwestern United States suggest that AHB-EHB hybrids will extend 200 km north of regions with a January maximal temperatures of 15-16°C. The formation of biotypic clines between AHB and EHB represents a unique opportunity to examine mechanisms responsible for the range limit of invaders.
- Research Article
- 10.7480/abe.2018.19.2528
- Sep 6, 2018
- A+BE: Architecture and the Built Environment
Sustainable High-rises
- Research Article
- 10.7480/abe.2018.19
- Sep 6, 2018
- A+BE: Architecture and the Built Environment
Sustainable High-rises
- Research Article
89
- 10.2307/2399080
- Jan 1, 1982
- Annals of the Missouri Botanical Garden
North America-Eurasia and South America-Africa were certainly joined in the classic reconstruction of Pangaea by Middle Triassic time. The line of collision and suture included the Appalachian Quachita-Marathon orogenic trend in the United States extending southwestward into what is now northeastern and southeastern Mexico and into Guatemala. Widespread continentality prevailed and there was no Gulf of Mexico or Caribbean Sea. In Late Triassic time and continuing into Early Jurassic time this construct began to founder by initial rifting between South America-Africa and North America. No oceanic crust was formed, however, thus Africa-South America were still completely connected by land or shallow sea to North America until mid-Jurassic time. During this same uppermost Triassic to Middle Jurassic period a largely continental magmatic arc was draped across the Pacific margin of southwestern North America and apparently continued unbroken into northwestern South America. Sometime in the Middle Jurassic oceanic crust began to form by seafloor spreading in the central Atlantic and Gulf of Mexico as separation of South America-Africa from North America accelerated. Once this dense crust began to form the trailing margins of the continents subsided below sea-level and construction of the Atlantic and Gulf coast continental shelves began. Evidence is quite conclusive that this ocean floor spreading did not reach the Pacific Ocean, but was transformed from the southwestern corner of the newly opened Gulf of Mexico northwestward across Mexico via a complex left-slip transform fault system that reached the Pacific margin near Los Angeles. In Early Cretaceous time spreading continued in the central Atlantic but extended southward into the southern Atlantic. As the main axis of spreading extended into the south Atlantic, spreading ceased in the Gulf of Mexico. The south Atlantic spreading initiated separation of South America from Africa, but they probably remained in partial contact via ridge-ridge transform faults until Late Cretaceous time. South America must have finally completely separated from North America in Early Cretaceous time, probably via a rift along the eastern edge of Yucatan and the Nicaraguan rise. By Late Jurassic time the Pacific continental margin arc had waned and was replaced by a complex, largely oceanic, magmatic arc whose position relative to southwestern North America and northwestern South America is not known. What we do know is that by Late Cretaceous-Early Tertiary time it had accreted against the Pacific margins of both. Connections between the continents are also not known but could have included a largely submarine magmatic arc, parts of which may have subsequently dispersed eastward as the Greater Antilles. Much of what is now Middle America is apparently underlain by oceanic crust at least as young as Late Cretaceous in age. By Late Cretaceous time the Greater Antilles magmatic arc seems to have fully formed and subsequently moved northeastward as a northeast-facing subduction system during Late CretaceousEarly Tertiary Laramide time. The Greater Antilles arc-trench system ceased activity in Late Eocene time as it collided with Florida and the Bahama platform and as Laramide orogeny waned throughout western North America. This was followed by a major plate reorganization in the Caribbean-Middle America region nearly 40 m.y. B.P. which established the Caribbean plate more or less as we know it today. The principal change was initiation of the Lesser Antilles magmatic arc as an east-facing subduction system that began to consume Atlantic ocean floor. Also, a west-facing subduction system may have formed about this time along a proto-Central American western margin of the Caribbean plate. However, much of what is now Central America may have initially been off southern Mexico. The northern and southern margins of the Caribbean plate evolved into complex transform and transpressive systems as North and South America moved westward past a nearly stationary Caribbean plate. These motions significantly fragmented the Greater Antilles into their present array. There is no evidence for any complete land connection between North and South America via the Greater and/or Lesser Antilles throughout later Mesozoic or Tertiary time. Nor is there any evidence for complete land connection via Central America and the Isthmus of Panama before Neogene time.
- Research Article
53
- 10.2307/2845992
- Jul 1, 1995
- Journal of Biogeography
We performed an analysis of the climatic patterns of the temperate zones in North and South America using a global database of monthly precipitation and temperature. Three synthetic variables, identified by a principal component analysis (PCA) of the monthly data, were used: mean annual precipitation, mean annual temperature and the proportion of the precipitation falling during summer. We displayed the spatial gradient of the three variables by constructing a com- posite colour raster image. We used a parallelepiped classification algorithm to locate areas in both continents that are climatically similar to five North American Long Term Ecological Research sites and to two South American long- term ecological research sites. The same algorithm was used to identify areas in South America which are climatically similar to some of the major grassland and shrubland types of North America. There is substantial overlap between the climates of North and South America. Most of the climatic patterns found in South America are well represented in North America. How- ever, there are certain climates in North America that are not found in South America. An example is a climate with relatively low mean annual temperature and high summer precipitation. The climatic signatures of three North American LTER sites (Cedar Creek, CPER and Sevilleta) were not found in South America. The climatic signatures of two LTER sites (Konza and Jornada) had some representation in South America. Two South American research sites (Rio Mayo and Las Chilcas) were well represented climatically in North America. The climates of six out of seven selected North American grassland and shrubland types were represented in South America. The northern mixed prairie type was not represented climatically in South America. Our analysis sug- gests that comparisons of North and South America can provide a powerful test of climatic control over vegetation.
- Research Article
3
- 10.2307/2418925
- Jul 1, 1989
- Systematic Botany
The American genus Pappophorum, with species in both Northern and Southern hemi- spheres, has been a source of considerable taxonomic confusion. During the past two decades, various agrostologists have estimated the number of species to be from 9 to 20. Not only has there been disagreement regarding the number of species, the application of various binomials has differed among specialists who have studied the group. Three names that have continued to be applied in different senses are: P. mucronulatum, P. subbulbosum, and P. vaginatum Buckley, non Philippi. For many years the name P. mucronulatum was applied to plants from both North and South America, and P. subbulbosum and P. vaginatum were relegated to synonymy under that name. Some recent botanists have held that only P. pappiferum and perhaps P. subbulbosum are amphitropic, whereas P. vaginatum is restricted to North America, and P. mucronulatum and P. subbulbosum, both distinct species, occur only in South America. Authors of the present study recognize only eight species for the genus. Pappophorum mucronulatum is treated as a South American species, which is restricted to Brazil, Colombia, and Venezuela. Pappophorum vaginatum, with P. subbulbosum as a synonym, occurs in the southwestern United States and Mexico, and also in Argentina and Uruguay. A key to the species along with the important synonymy is provided. Pappophorum Schreber is an American genus, with the majority of taxa in the Southern Hemi- sphere. The range in South America is from Colombia and Venezuela, south through Ec- uador, Peru, Bolivia, and Brazil to Paraguay, Argentina, and Uruguay, and in North America from Mexico to southwestern U.S.A. Estimates regarding the total number of species have var- ied from 12 (Burkart 1969) to 20 (Cabrera 1970; Nicora 1978). Pensiero (1986), the most recent South American author to deal with Pappopho- rum, listed the number as approximately 10, which is in essential agreement with Clayton and Renvoize (1986), who gave the number as nine. Hitchcock (1913), in his treatment of the Mex- ican grasses, listed three species under Pappo- phorum. One of these, P. wrightii S. Watson, is a
- Research Article
1
- 10.1002/tax.12343
- Oct 1, 2020
- TAXON
(2778) Proposal to conserve the name <i>Zamites</i> (fossil <i>Cycadophyta</i>: <i>Bennettitales</i>) with a conserved type
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