A new monotypic acronictine noctuid moth genus from East Africa (Lepidoptera: Noctuidae: Acronictinae)

Aim The Kakamega Forest, western Kenya, has been biogeographically assigned to both lowland and montane forest biomes, or has even been considered to be unique. Most frequently it has been linked with the Guineo‐Congolian rain forest block. The present paper aims to test six alternative hypotheses of the zoogeographical relationships between this forest remnant and other African forests using reptiles as a model group. Reptiles are relatively slow dispersers, compared with flying organisms (Aves and Odonata) on which former hypotheses have been based, and may thus result in a more conservative biogeographical analysis. Location Kakamega Forest, Kenya, Sub‐Saharan Africa. Methods The reptile diversity of Kakamega Forest was evaluated by field surveys and data from literature resources. Faunal comparisons of Kakamega Forest with 16 other African forests were conducted by the use of the ‘coefficient of biogeographic resemblance’ using the reptile communities as zoogeographic indicators. Parsimony Analysis of Endemism and Neighbour Joining Analysis of Endemism were used to generate relationship trees based on an occurrence matrix with paup*. Results The analysis clearly supports the hypothesis that the Kakamega Forest is the easternmost fragment of the Guineo‐Congolian rain forest belt, and thus more closely related to the forests of that Central–West African complex than to any forest further east, such as the Kenyan coastal forests. Many Kenyan reptile species occur exclusively in the Kakamega Forest and its associated forest fragments. Main conclusions The Kakamega Forest is the only remnant of the Guineo‐Congolian rain forest in the general area. We assume that the low degree of resemblance identified for the Guineo‐Congolian forest and the East African coastal forest reflect the long history of isolation of the two forest types from each other. Kenyan coastal forests may have been historically connected through forest ‘bridges’ of the southern highlands with the Congo forest belt, allowing reptile species to migrate between them. The probability of a second ‘bridge’ located in the region of southern Tanzanian inselbergs is discussed. Although not particularly rich in reptile species, the area should be considered of high national priority for conservation measures.

Burgess, N.D. & Mlingwa, C.O.F. 2000. Evidence for altitudinal migration of forest birds between montane Eastern Arc and lowland forests in East Africa. Ostrich 71 (1 & 2): 184–190. In this paper we assess the evidence for altitudinal movements of forest birds from the montane forests of the Eastern Arc mountains of East Africa to nearby lowland forest patches. For 34 montane species, including all the Eastern Arc endemics except Banded Green Sunbird Anthreptes rubritorques there is no evidence that they undertake seasonal movements to lower altitudes. An additional 26 montane species, of somewhat wider distribution, have been recorded at low (<500 m) altitudes during the cold/dry season (June to September). Most records of these montane birds at lower altitudes are from sites adjoining montane forest areas, although a few records are from lowland coastal forests at 100–240 km distance from montane areas. Only five of the 26 species (White-chested Alethe Alethe fulleborni, White-starred Forest Robin Pogonocichla stellata, Orange Ground Thrush Zoothera gurneyi, Evergreen Forest Warbler Bradypterus mariae and Barred Long-tailed Cuckoo Cercococcyx montanus) are regularly and commonly reported in the lowlands. They are also found in the lowlands in small numbers during the warm/wet season (October to February), when they may breed. The abundance of at least four, and probably more, of the forest birds with a more widespread distribution in the lowland and montane forests of East Africa declines greatly at high altitudes from the onset of the cold/wet season (February) and only increases again at the start of the warm/wet season (September). It is not known how far these species move as they cannot be easily separated from resident populations in lowland forests, and there are no ringing recoveries in different forests. Altitudinal migration of a proportion of the Eastern Arc avifauna is the most likely explanation for available data, although source-sink metapopulation theories may be helpful to explain the distributions of some species. As the movement of forest birds from the Eastern Arc to the lowland forests does not involve the rare endemics, they are of lower conservation concern, but the presence of montane and lowland forest may be important for the long-term survival of some more widely distributed forest species.

I have observed many chimpanzees with injuries on their hands or feet in the Kalinzu Forest, Uganda. Of 16 male chimpanzees identified, 2 had a snare wire embedded in their hand. Another 7 male chimpanzees also had injuries on their limbs, which were likely caused by snares including a loss of an entire hand/foot, a clawed hand or wrist, and a loss of some digits. Such injuries caused by encounters with snares have frequently been reported from other chimpanzee study sites in Uganda: such as the Kibale Forest and the Budongo Forest. Although it is uncertain whether such injuries influence survival or reproduction of chimpanzees, it is important to continue investigation on the actual conditions of chimpanzee injuries and the human hunting practices in their habitats.

Amauris nossima Ward (Nymphalidae, Danainae) was known before this study only from Madagascar and the island of Mayotte, without clearly defined subspecies, but with five names considered invalid or infrasubspecific. It has generally been considered a rare species of butterfly classified by IUCN as vulnerable (Vu B1 + 2c). Here, it is reported for the first time from continental Africa. A new subspecies A. nossima mrima n. ssp. is described from two remnants of rain forest, Mrima and Buda, on the southern Kenyan coast, where it occurs sympatrically with Amauris ochlea Boisduval, widely distributed in East Africa. Their, previously predicted, sister-species status is confirmed by morphological (male and female genitalia) and partial mitochondrial (COI) data. The finding of A. nossima in Kenya opens the discussion on a possible recolonization of Africa from Madagascar, which would be an exception to a predominant biogeographical pattern of African origin of Malagasy butterflies via overseas dispersal.

BackgroundHuman immunodeficiency virus (HIV) type 1 and 2, the causative agents of acquired immunodeficiency syndrome (AIDS), emerged from African non-human primates (NHPs) through zoonotic transmission of simian immunodeficiency viruses (SIV). Among African NHPs, the Cercopithecus genus contains the largest number of species known to harbor SIV. However, our understanding of the diversity and evolution of SIVs infecting this genus is limited by incomplete taxonomic and geographic sampling, particularly in East Africa. In this study, we screened blood specimens from red-tailed guenons (Cercopithecus ascanius schmidti) from Kibale National Park, Uganda, for the presence of novel SIVs using unbiased deep-sequencing.FindingsWe describe and characterize the first full-length SIV genomes from wild red-tailed guenons in Kibale National Park, Uganda. This new virus, tentatively named SIVrtg_Kib, was detected in five out of twelve animals and is highly divergent from other Cercopithecus SIVs as well as from previously identified SIVs infecting red-tailed guenons, thus forming a new SIV lineage.ConclusionsOur results show that the genetic diversity of SIVs infecting red-tailed guenons is greater than previously appreciated. This diversity could be the result of cross-species transmission between different guenon species or limited gene flow due to geographic separation among guenon populations.

A review of late quaternary pollen studies in East, Central and Southern Africa

SummaryWidespread and rapid losses of tropical rain forests have made understanding the responses of species to rain forest fragmentation an area of major concern. In this study we examined the impacts of habitat fragmentation on the species richness and faunal composition of butterflies in tropical rain forests in Sabah, Borneo. We analysed patterns of both α‐ and β‐diversity to assess the relative importance of differences in patch size, isolation and vegetation structure on the diversity and similarity of species assemblages. We used additive partitioning to assess the relative contributions of intact forest and forest remnants to overall species richness at a landscape scale and we examined which traits of species best predicted their responses to fragmentation.Species richness and diversity in rain forest remnants was significantly positively related to remnant size and significantly negatively related to isolation, in keeping with theories of island biogeography. Species assemblages at different sites were significantly nested, with those species most adversely affected by forest fragmentation having a narrow range of larval host‐plants and, to a lesser extent, being large‐bodied. No species endemic to Borneo was recorded in forest remnants smaller than 4000 ha, but even the smallest remnant (120 ha) supported species with geographical distributions confined within Sundaland (West Malaysia and the islands of the Sunda Shelf).Although assemblages were significantly nested, they departed substantially from perfect nestedness, with some species recorded only or predominantly in small, relatively depauperate remnants. As a result there was substantial β‐diversity among sites, which was related to variation in both fragment size and vegetation structure. At the landscape scale, diversity within sites was less than that between sites, and the majority of the diversity between sites was related to variation in fragment size.Synthesis and applications. Substantial diversity was added to the assemblage of butterflies in Bornean rain forests by virtue of species differences among fragments, which were related mainly to differences in patch size and vegetation structure. The data reported indicate that, despite having lower species richness, relatively small and isolated remnants of rain forest make a substantial contribution to regional diversity. Small isolated forest remnants are generally accorded low conservation status and given little protection, with the result that they often disappear over time because of continued anthropogenic disturbance. The results of this study indicate that the conservation value of small remnants of forest, in particular their contribution to environmental heterogeneity, should not be overlooked.

Sympatric guenons in East Africa associate with one another in mixed-species groups to an intermediate degree. This makes it possible to compare a given group's ecology and behavior when it is part of an association to when it is unaccompanied, and to correlate association tendency with various ecological parameters. Two studies incorporating these approaches have been made of sympatric Cercopithecus ascanius and C. mitis monkeys in the Kakamega Forest, Kenya, and the Kibale Forest, Uganda. The pattern of and reasons for association in each site are reviewed. Compared to Kakamega, association between C. ascanius and C. mitis in Kibale occurs less often, and the species appear to benefit relative to one another in different ways. These results suggest that the particular ecological setting greatly influences the nature of the interaction between species, through its effect on population structure, dietary overlap, food distribution, and community composition. The major ecological differences between the two study areas probably reflect post-Pleistocene history and possibly climate, but they have important consequences for the present-day population structure and feeding ecology of each species, and hence affect relations between them as well.

Kakamega district in Western Kenya represents the smallholder farming systems typical for much of the densely populated humid highlands in East Africa. A specific feature, however, is the presence of a protected forest reserve (Kakamega Forest National Park), covering some 20% of the district area. Year‐round crop production with little use of external inputs is resulting in declining soil fertility and crop yields. Technologies to counteract fertility constraints are rarely implemented, as they do not consider system diversity or farm‐specific characteristics. We surmised that farm type–specific targeting of technology options to address soil fertility–related production constraints would reduce the anthropogenic pressure on the resources of the adjacent Kakamega rainforest reserve. Based on Kenyan national census data, we selected 168 farms in physical proximity of the Kakamega forest and characterized them regarding production system and soil attributes. Cluster and principal component analyses identified five distinct farm categories. Three representative farms from each cluster group were subsequently selected to establish labor‐use patterns, draw resource‐flow maps, and determine NPK balances.Small subsistence‐oriented farms were most common (&gt; 50%), with maize yields of 0.9 t ha–1 (Cluster 1). Most farmers relied on the forest to provide fire wood, animal feed, and medicinal plants. Mixed farms, combining subsistence maize with industrial crops, were differentiated by soil type, with tea being grown on Ferralsol (Cluster 3), and sugar cane being grown on Acrisol (cluster 4). The dependence on forest resources was limited to animal grazing and the collection of feed stuff (Cluster 3), or the extraction of medicinal plants (Cluster 4). Only few farms showed a high degree of market orientation of the food‐crop production. These comprised either small farms with high investments in fertilizer and maize yields close to 2 t ha–1 (Cluster 2), or larger farms (1.6–3.9 ha) with low fertilizer but high hired‐labor use (Cluster 5). Their reliance on forest resources was generally low. Resource flows showed mainly patterns of nutrient export in subsistence farms, and more complex flow patterns, involving several farm compartments, in the diversified farms. Partial nutrient balances were strongly negative for N and K, irrespective of soil or farm type. Soil‐fertility characteristics reflected the nutrient balances with generally low C and N in all farms on Acrisol, and low P in farms not applying mineral fertilizers or farmyard manure. The proposed typology is expected to improve the targeting of technologies addressing soil fertility–related production constraints, and to reduce the pressure on forest resources. This is of particular importance in the case of small‐scale subsistence and mixed farms close to the forest margin.

DEVELOPMENT OF SOIL AND LITTER ARTHROPOD ASSEMBLAGES IN RAINFOREST RESTORATION

The groundnut leafminer, Aproaerema modicella (Deventer) (Lepidoptera: Gelechiidae) is a well known groundnut pest in Asia. It was first reported in east Africa during 1998 after which it rapidly spread throughout East and southern Africa. The adult is a small brownish-grey moth and it difficult to distinguish between the different sexes even under a stereomicroscope. Research on pest behaviour is hampered by the fact that male and female moths cannot be distinguished. The aim of this study was to identify distinguishing morphological characteristics of male and female larvae and pupae that are visible with the naked eye or under a stereomicroscope. The presence of pink coloured gonads which are easily visible through the cuticle was a distinguishing characteristic of male larvae. The position of the male genital aperture is a useful distinguishing characteristic present in male pupae. It is situated further away from the proximal side of the last abdominal segment, compared to the aperture of oviduct and bursa copulatrix of the female.

BackgroundAfrican non-human primates (NHPs) are natural hosts for simian immunodeficiency viruses (SIV), the zoonotic transmission of which led to the emergence of HIV-1 and HIV-2. However, our understanding of SIV diversity and evolution is limited by incomplete taxonomic and geographic sampling of NHPs, particularly in East Africa. In this study, we screened blood specimens from nine black-and-white colobus monkeys (Colobus guereza occidentalis) from Kibale National Park, Uganda, for novel SIVs using a combination of serology and “unbiased” deep-sequencing, a method that does not rely on genetic similarity to previously characterized viruses.ResultsWe identified two novel and divergent SIVs, tentatively named SIVkcol-1 and SIVkcol-2, and assembled genomes covering the entire coding region for each virus. SIVkcol-1 and SIVkcol-2 were detected in three and four animals, respectively, but with no animals co-infected. Phylogenetic analyses showed that SIVkcol-1 and SIVkcol-2 form a lineage with SIVcol, previously discovered in black-and-white colobus from Cameroon. Although SIVkcol-1 and SIVkcol-2 were isolated from the same host population in Uganda, SIVkcol-1 is more closely related to SIVcol than to SIVkcol-2. Analysis of functional motifs in the extracellular envelope glycoprotein (gp120) revealed that SIVkcol-2 is unique among primate lentiviruses in containing only 16 conserved cysteine residues instead of the usual 18 or more.ConclusionsOur results demonstrate that the genetic diversity of SIVs infecting black-and-white colobus across equatorial Africa is greater than previously appreciated and that divergent SIVs can co-circulate in the same colobine population. We also show that the use of “unbiased” deep sequencing for the detection of SIV has great advantages over traditional serological approaches, especially for studies of unknown or poorly characterized viruses. Finally, the detection of the first SIV containing only 16 conserved cysteines in the extracellular envelope protein gp120 further expands the range of functional motifs observed among SIVs and highlights the complex evolutionary history of simian retroviruses.

Kibale National Park (KNP) is a biodiversity hotspot. Covering 795km2 it is home to the most diverse population of primates in Africa including 13 species and the largest populations of Eastern Chimpanzees (Pan troglodytes schweinfurthii) in East Africa. Rural communities around the park rely heavily on subsistence agriculture and natural resources that surround the park for survival. Population density near the park is greater than 300 people per kilometer, exacerbating pressure on natural resources around and within the park. UNITE for the Environment (UNITE) is a conservation organization working with KNP that provides communities with conservation education programs that address local environmental needs and promotes sustainable solutions to support the protection of this important primate habitat. In prior work, UNITE found considerable variation in how well these sustainable activities are adopted. To understand the factors that influence uptake of different sustainable practices by households, we conducted a community survey on participants' motivations and barriers. Results highlight a number of factors influencing adoption including education and awareness, access, convenience, economic and direct benefits associated with the practices as well as community influence. These results imply that efforts to promote the widespread adoption of sustainable practices should focus on creating more awareness on sustainable behaviors in the targeted communities, which can change their perceptions and attitudes towards the practices and emphasize the direct benefits that arise from adoption of such practices.

Simple SummaryWild meat is a primary source of protein for many rural populations and its illegal harvest can threaten worldwide wildlife conservation efforts. Near tropical forests, wild meat can be an alternative to domestic meat consumption for different reasons (economy, access, culture, etc.). We aimed to understand drivers of illegal activities affecting wildlife in a hotspot of biodiversity (Sebitoli, Kibale National Park, Uganda) hosting threatened species (including chimpanzees) and bordered by agricultural landscapes with high human densities. Illegal activities were mapped, and individual interviews were conducted. We highlighted that being a young man coming from districts contiguous to Kibale National Park particularly raises the odds of consuming wild meat. This study might help to identify and recommend sustainable social and environmental alternatives to manage biodiversity.The African tropical forests host an inestimable number of resources, including food, medicine, vegetal and animal species. Among them, chimpanzees are threatened with extinction by human activities affecting their habitats, such as forest product harvesting, and/or more directly, snaring and trafficking. We aimed to better understand the spatial distribution of these illegal activities, and the reasons for setting snares and consuming wild meat in an agricultural landscape (subsistence farming and cash crops) densely populated near a protected area (Sebitoli, Northern part of Kibale National Park, Uganda). To carry out this study, we combined GPS records of illegal activities collected with group counts (in total, n = 339 tea workers, 678 villagers, and 1885 children) and individual interviews (n = 74 tea workers, 42 villagers, and 35 children). A quarter of illegal activities collected (n = 1661) targeted animal resources and about 60% were recorded in specific areas (southwest and northeast) of the Sebitoli chimpanzee home range. Wild meat consumption, which is illegal in Uganda, is a relatively common practice among participants (17.1% to 54.1% of respondents depending on actor types and census methods). However, consumers declared that they eat wild meat unfrequently (0.6 to 2.8 times per year). Being a young man coming from districts contiguous to Kibale National Park particularly raises the odds of consuming wild meat. Such an analysis contributes to the understanding of wild meat hunting among traditional rural and agricultural societies from East Africa.

BackgroundNodular Oesophagostomum genus nematodes are a major public health concern in some African regions because they can be lethal to humans. Their relatively high prevalence in people has been described in Uganda recently. While non-human primates also harbor Oesophagostomum spp., the epidemiology of this oesophagostomosis and the role of these animals as reservoirs of the infection in Eastern Africa are not yet well documented.Methodology/Principal FindingsThe present study aimed to investigate Oesophagostomum infection in terms of parasite species diversity, prevalence and load in three non-human primates (Pan troglodytes, Papio anubis, Colobus guereza) and humans living in close proximity in a forested area of Sebitoli, Kibale National Park (KNP), Uganda. The molecular phylogenetic analyses provided the first evidence that humans living in the Sebitoli area harbored O. stephanostomum, a common species in free-ranging chimpanzees. Chimpanzees were also infected by O. bifurcum, a common species described in human populations throughout Africa. The recently described Oesophagostomum sp. found in colobine monkeys and humans and which was absent from baboons in the neighboring site of Kanyawara in KNP (10 km from Sebitoli), was only found in baboons. Microscopic analyses revealed that the infection prevalence and parasite load in chimpanzees were significantly lower in Kanyawara than in Sebitoli, an area more impacted by human activities at its borders.Conclusions/SignificanceThree different Oesophagostomum species circulate in humans and non-human primates in the Sebitoli area and our results confirm the presence of a new genotype of Oesophagostomum recently described in Uganda. The high spatiotemporal overlap between humans and chimpanzees in the studied area coupled with the high infection prevalence among chimpanzees represent factors that could increase the risk of transmission for O. stephanostomum between the two primate species. Finally, the importance of local-scale research for zoonosis risk management is important because environmental disturbance and species contact can differ, leading to different parasitological profiles between sites that are close together within the same forest patches.