A new Colombian species of Protium sect. Pepeanthos. Studies in Neotropical Burseraceae XXXIII

Hoffmann's two-toed sloth ( Choloepus hoffmanni ) has been extensively studied since the 1940s in some countries across its distribution range. However, several aspects of its biology remain unexplored or have only been described superficially. This study updated the geographic distribution of this sloth species in Colombia, describing external features of specimens that inhabit different areas of the country. Additionally, a revision of the current state of knowledge of this species in Colombia was conducted, with a focus on the identification of information gaps and the major threats affecting this species. An updated map of the distribution of C. hoffmanni in Colombia was elaborated, including the distribution reported by IUCN, the records of specimens received in the Xenarthra center for rescue and rehabilitation (CRRX, for its acronym in Spanish; primary information), the wildlife care centers of the Autonomous Regional Corporations (CARs, for its acronym in Spanish), and records of biological collections available online (secondary information). CRRX specimens were examined externally, and the external morphological characteristics (skull and body shape; pelage color, length and density) were described. A comprehensive literature review was performed, compiling studies conducted over the last two decades on this species in Colombia, analyzing their respective contributions to its knowledge. The records obtained provide localities of occurrence for the species not previously recognized by IUCN, in 54 municipalities of 12 departments of Colombia. There are external morphological patterns defining lowland (interandean valleys and Caribbean region), highland (Colombian Andes) and Colombian Pacific populations. The biggest information gaps regard demography, distribution and genetics. The main threats identified are habitat loss (infrastructure construction, forest clearance) and specimen collection (illegal trade). The localities of occurrence obtained confirm the distribution of this species in areas previously reported at the north and center of the Cordillera Occidental, Cordillera Central and Cauca River valley, besides the north, center and south of the Cordillera Oriental, Piedemonte Llanero, and the southern Magdalena River valley. The external review of specimens by CRRX shows that although it is impossible to derive clear taxonomic inferences from the evidence collected, pelage color, length and density are the most representative external traits that differentiate lowland, highland and Pacific Colombian populations. The prioritization of issues such as the conservation status and threats in the investigation of this species in Colombia during the last twenty years have relegated key aspects such as demography, distribution, taxonomy and genetics, a fact that poses a challenge for the execution of proper management actions in the country.

Knowledge of the geographical distribution of Leishmania species allows guiding the sampling to little-studied areas and implementing strategies to define risk zones and priority areas for control. Given that there is no publication that collects this information, the search, review, and compilation of the available scientific literature that has identified species in Colombia is presented in this paper. A bibliographic search was performed in PubMed, Web of Knowledge, Google Scholar, SciELO and LILACS with the terms "(Leishmania OR Leishmaniasis) AND species AND Colombia", without restrictions on publication year, language or infected organism; records of national scientific events and repositories of theses from Colombian universities were also included. Eighty-six scientific documents published between 1985 and 2017 were found in which the species of Leishmania and their geographical origin were indicated. The species reported, in descending order of frequency, were: Leishmania (Viannia) panamensis, L. (V.) braziliensis, L. (V.) guyanensis, L. (Leishmania) infantum, L. (L.) amazonensis, L. (L.) mexicana, L. (V.) colombiensis, L. (V.) lainsoni and L. (V.) equatorensis; the last three were found with the same frequency. Leishmania species were reported from 29 departments. Information on the distribution of Leishmania species in Colombia is limited; therefore, it is necessary to gather existing data and propose studies that consolidate the distribution maps of Leishmania species in Colombia. This would allow the detection of areas where species have not been identified as well as the comparison of existing parasite and vector distributions.

Colombia is the country with the highest number of orchid species (4270), whose optimal habitat is cold and humid forests. However, the outlook for conservation is alarming, considering that deforestation is causing the loss of millions of hectares of forests. This situation has led to the existence of 206 endangered orchid species. Therefore, this research was conducted to determine Sites of Special Importance for the Conservation of Threatened Orchid Species in Colombia (SSICO), through an analysis of their spatial and altitudinal distribution using various databases, to make a selection of nature reserves on a municipality scale, using Marxan software, and employing relevant parameters (richness, rarity, and IUCN category). Furthermore, the results were later compared with the Protected Areas System, determining their coverage to propose SSICOs. 674 records of the presence of threatened orchids in 277 municipalities were obtained. Urrao, Abrego, and Frontino were the areas with the greatest richness and rarity. Marxan selected 47 municipalities located mostly in the Andes region, and four SSICOs were prioritized, which are located in the Antioquia, Norte de Santander, Nariño and Putumayo provinces. These SSICOs, in addition to being points of great biodiversity, are areas with special socio-economic characteristics that influence the management of natural resources. These areas require timely attention, research, and intervention by environmental authorities because of their importance for conserving orchids and Andes Forests.

Leopardus tigrinus is among the least known carnivore species in the Neotropics, including considerable taxonomic uncertainty. Here we model the distribution, connectivity and overlap with existing conservation areas for the species in Colombia. Using a Species Distribution Modeling approach, we estimated current potential range of the species in Colombia and identified potential habitat blocks remaining in the country. In addition, we designed a connectivity network across the available cores, using a circuit theory approach, to evaluate habitat linkage. Finally, we defined a prioritization scheme for the remaining habitat cores and assessed the level of coverage of protected areas for the country. L. tigrinus is potentially present across the three Andean branches of Colombia, with still considerable continuous habitat cores, mostly located on the eastern and central Andean ranges. Most habitat cores are theoretically connected, but nearly 15% are isolated. Priority areas were located across the eastern and central ranges, but with very significant and promising cores in the northern eastern and western ranges. Current level of protection indicates nearly 30% of the range is "protected", but only about 25% is under national strict protected areas. Evolution of this coverage showed some periods of significant increase but interestingly the number of cores grew at a faster rate than overall proportion protected, likely indicating numerous discontinuous fragments, and not contiguous functional landscapes. This represents the most updated assessment of the distribution and conservation status for the species in Colombia, and indicates the numerous conservation opportunities, especially in most populated areas of the country. We found unique business environmental passive's opportunities, including compensation and development potential, which are becoming more available in the country.

Leopardus tigrinus is among the least known carnivore species in the Neotropics, including considerable taxonomic uncertainty. Here we model the distribution, connectivity and overlap with existing conservation areas for the species in Colombia. Using a Species Distribution Modeling approach, we estimated current potential range of the species in Colombia and identified potential habitat blocks remaining in the country. In addition, we designed a connectivity network across the available cores, using a circuit theory approach, to evaluate habitat linkage. Finally, we defined a prioritization scheme for the remaining habitat cores and assessed the level of coverage of protected areas for the country. L. tigrinus is potentially present across the three Andean branches of Colombia, with still considerable continuous habitat cores, mostly located on the eastern and central Andean ranges. Most habitat cores are theoretically connected, but nearly 15% are isolated. Priority areas were located across the eastern and central ranges, but with very significant and promising cores in the northern eastern and western ranges. Current level of protection indicates nearly 30% of the range is “protected”, but only about 25% is under national strict protected areas. Evolution of this coverage showed some periods of significant increase but interestingly the number of cores grew at a faster rate than overall proportion protected, likely indicating numerous discontinuous fragments, and not contiguous functional landscapes. This represents the most updated assessment of the distribution and conservation status for the species in Colombia, and indicates the numerous conservation opportunities, especially in most populated areas of the country. We found unique business environmental passive’s opportunities, including compensation and development potential, which are becoming more available in the country.

SummaryA rust disease was observed during routine disease surveys of Eucalypt species in Colombia. The cause of the disease was identified, using morphology and DNA sequence data, as the myrtle rust pathogen, Puccinia psidii. We evaluated the susceptibility of Eucalyptus grandis and the hybrid Eucalyptus urograndis to P. psidii. This is the first report of this pathogen on Corymbia citriodora and Eucalyptus species in Colombia.

Fifteen species of scorpaenids grouped in four genera (Neomerinthe, Pontinus, Scorpaena and Scorpaenodes) are known from the Colombian continental Caribbean. Caribbean scorpaenids may be separated in two ecological groups, those preferably inhabiting soft bottoms (Scorpaena calcarata is the most frequent species in Colombia), and those found in reef areas (Scorpaena plumieri, Scorpaena albifimbria and Scorpaenodes caribbaeus are the most frequent species in Colombia). The record of Pontinus rathbuni is remarkable, because it was unknown from Colombian waters, yet many specimens were collected trawling below 38 m in the Cartagena region. It seems that P. rathbuni and S. calcarata have two populations, one from North America, and another from South America; theses cases would be similar to that of P. longispinis, which includes two populations in the western Atlantic.

We present the geographical distribution and epidemiological importance for Chagas' disease transmission of 23 triatomine species in Colombia. based on bibliographical reports available in the country and on reference collections housed in the Entomology Laboratory at the lnstituto Nacional de Salud and the Tropical Microbiology and Parasitology Research Center at Universidad de los Andes. We also discuss the ecological conditions under wich triatomines in countries bordering Colombia have been reported. airned at establishing the possible presence of species that have not been reported yet in our country. We, therefore, reportpossible presence in Colombia of species with wild habitats such as Alberprosenia malheiroi, Belminus lapofiei, and Cavernicola lenti, all of them located in the Amaron region; Triatoma nigromaculata. which shows intradomiciliary habits, in the Eastern mountain range; Panstrongylus chinai, probably located in wild habitats and also in settlers' dwellings in the Amazon region dueto its attraction to light, and Alberprosenia goyovargasi, located in wild habitats in our border with Venezuela. The importance of national surveillance programs is highlighted as an aid strategy for the study of triatomine species in Colombia.

Local anomalies in rainfall and temperature induced by El Niño and La Niña episodes could change the structure of the vector community. We aimed to estimate the effect of the El Niño-La Niña cycle in the potential distribution of cutaneous leishmaniasis (CL) vector species in Colombia and to compare the richness of the vectors with the occurrence of CL in the state of Norte de Santander. The potential distributions of four species were modeled using a MaxEnt algorithm for the following episodes: La Niña 2010-2011, Neutral 2012-2015 and El Niño 2015-2016. The relationship between the potential richness of the vectors and the occurrence of CL in Norte de Santander was evaluated with a log-binomial regression model. During the El Niño 2015-2016 episode, Lutzomyia ovallesi and Lutzomyia panamensis increased their distribution into environmentally suitable areas, and three vector species (Lutzomyia gomezi, Lutzomyia ovallesi and Lutzomyia panamensis) showed increases in the range of their altitudinal distribution. During the La Niña 2010-2011 episode, a reduction was observed in the area suitable for occupation by Lutzomyia gomezi and Lutzomyia spinicrassa. During the El Niño 2015-2016 episode, the occurrence of at least one CL case was related to a higher percentage of rural localities showing a richness of vectors = 4. The anomalies in rainfall and temperature induced by the episodes produced changes in the potential distribution of CL vectors in Colombia. In Norte de Santander, during Neutral 2012-2015 and El Niño 2015-2016 episodes, a higher probability of at least one CL case was related to a higher percentage of areas with a greater richness of vectors. The results help clarify the effect of the El Niño-La Niña cycle in the dynamics of CL in Colombia and emphasize the need to monitor climate variability to improve the prediction of new cases.

Multilocus enzyme electrophoresis (MLEE) is the reference standard for the characterization of Leishmania species. The test is restricted to specialized laboratories due to its technical complexity, cost, and time required to obtain results. Polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) is used to identify Leishmania species. To establish the concordance between the two tests as identifying methods for circulating species in Colombia. A total of 96 isolates from patients with cutaneous or mucosal leishmaniasis were selected and identified by MLEE and PCR-RFLP with miniexon and hsp70 as the molecular targets, which were used sequentially. Restriction enzymes HaeIII and BccI were similarly applied. Cohen's kappa coefficient and the 95% confidence interval (CI) were calculated. The kappa coefficient and the 95% CI between MLEE and PCR-RFLP displayed "very good" concordance with a coefficient of 0.98 (CI95%: 0.98 to 1.00). The identified species were LeishmaniaViannia braziliensis, Leishmania Viannia panamensis, Leishmania Viannia guyanensis and Leishmania Leishmania amazonensis. A total of 80 of the 96 isolates were sequenced and the results obtained by PCR-RFLP were confirmed. Due to the concordance obtained between tests results with the amplification of the genes miniexon and hsp70, PCR-RFLP is proposed as an alternative for identifying circulating Leishmania species in Colombia.

The introduction of alien species can carry negative consequences to the areas in which they appear. Early detection of introduced species is key if management practices are to be effectively implemented. Here, based on specimens from collections and citizen science observations, we document the recent introduction of two alien Heteroptera (Insecta: Hemiptera) species in Colombia: Brachyplatys subaenus (Westwood, 1837) (Plataspidae) and Thaumastocoris peregrinus Carpintero & Dellapé, 2006 (Thaumastocoridae). Brachyplatys subaenus was found in two localities (Bolívar and Valle del Cauca), whereas T. peregrinus was found in a single locality (Bogotá) so far. Future research activities should establish the geographic range of these species, as well as document their host plant associations, in Colombia.

Local anomalies in rainfall and temperature induced by El Niño and La Niña episodes could change the structure of the vector community. We aimed to estimate the effect of the El Niño–La Niña cycle in the potential distribution of cutaneous leishmaniasis (CL) vector species in Colombia and to compare the richness of the vectors with the occurrence of CL in the state of Norte de Santander. The potential distributions of four species were modeled using a MaxEnt algorithm for the following episodes: La Niña 2010–2011, Neutral 2012–2015 and El Niño 2015–2016. The relationship between the potential richness of the vectors and the occurrence of CL in Norte de Santander was evaluated with a log-binomial regression model. During the El Niño 2015–2016 episode, Lutzomyia ovallesi and Lutzomyia panamensis increased their distribution into environmentally suitable areas, and three vector species (Lutzomyia gomezi, Lutzomyia ovallesi and Lutzomyia panamensis) showed increases in the range of their altitudinal distribution. During the La Niña 2010–2011 episode, a reduction was observed in the area suitable for occupation by Lutzomyia gomezi and Lutzomyia spinicrassa. During the El Niño 2015–2016 episode, the occurrence of at least one CL case was related to a higher percentage of rural localities showing a richness of vectors = 4. The anomalies in rainfall and temperature induced by the episodes produced changes in the potential distribution of CL vectors in Colombia. In Norte de Santander, during Neutral 2012–2015 and El Niño 2015–2016 episodes, a higher probability of at least one CL case was related to a higher percentage of areas with a greater richness of vectors. The results help clarify the effect of the El Niño–La Niña cycle in the dynamics of CL in Colombia and emphasize the need to monitor climate variability to improve the prediction of new cases.

BackgroundChagas disease is considered to be endemic in up to 40% of the territory of Colombia, and to date 27 triatomine species have been reported the country. The purpose of this study was to update the geographical distribution of triatomine species in Colombia and assess the species richness patterns and their altitudinal distribution.MethodsOccurrence data were compiled between 2007 and 2020, including from reports of entomological surveillance from the Instituto Nacional de Salud (INS), the Centro de Investigaciones en Microbiología y Parasitología Tropical (CIMPAT) at Universidad de Los Andes and a review of the literature. Geographic Information Systems (GIS) were used to describe general species richness patterns of the Triatominae subfamily. To establish the altitudinal distribution of the triatomine species, ranges were obtained from reports with unique elevation values. A generalized linear model was fitted, based on a Poisson distribution, to test the relation between triatomine species richness and Chagas disease cases (2012–2019).ResultsAn updated geographical and altitudinal distribution for triatomine species in Colombia was established, with 507 municipalities added to the previously known distributions. The greatest triatomine richness in Colombia was found to be concentrated in the northeastern region of the country, extending towards the center to the departments of Arauca, Casanare and Meta. Regarding the altitudinal distribution, the study revealed that the species Rhodnius prolixus and Triatoma dimidiata have the greatest altitudinal ranges. The data also suggest a positive relation between species richness and number of Chagas disease cases reported per department.ConclusionsAltitudinal ranges for 17 triatomine species found in Colombia are presented. Species richness and species composition patterns are also described, and areas with a higher risk of transmission based on the relation found with Chagas disease cases are highlighted. This updated distribution reveals that Panstrongylus geniculatus is the triatomine with the largest presence by municipalities in Colombia, being reported in 284 municipalities, followed by Rhodnius prolixus in 277 municipalities.Graphical

Background1. Colombia with 1941 known recorded bird species is one of the most species rich countries in the world. Efforts are necessary to conserve, study and promote sustainable use of this important taxonomic group throughout Colombia’s vast territory.2. In an ideal world, informed decisions that are based on sound scientific information should be likelier to have successful outcomes. Nevertheless, there are barriers that make it difficult to access and use information in a timely fashion. Those same barriers impede the study, conservation and sustainable use of bird species in Colombia. On the other hand, given that there is good documentation about the ecology of a large number of species, information about the distribution of birds can be easily incorporated into decision-making processes, once this information becomes readily available in a consumable format using Geographic Information Sciences tools.3. In this context, the main objective of this paper is to present the first compilation of the current distribution of 1889 (97%) species of birds in Colombia, using expert criteria. The shapefiles were used to show the distribution and diversity of bird species in Colombia under both geopolitical and conservation geographic units.4. The information provided in this paper can be used as a baseline for a huge number of initiatives that aim to strengthen conservation efforts and improve knowledge about one the most unique taxonomic groups in the country. These range from land use planning strategies at the municipal or department scale to sustainable use of bird species - such as those initiatives related to bird watching - in Colombia.New informationThis study has considered three key aspects: 1) the importance of birds for Colombia’s ecosystems, 2) the privileged place of Colombia in bird species richness and 3) the importance of data mobilisation in formats easily consumable by Geographic Information Systems (GIS) to facilitate the processes of informed decision-making. We present the first compilation - in shapefile format - for 1889 of the 1941 bird species recorded from Colombia. Using this novel collection, we showed the species richness of birds in Colombia’s 33 Departments plus its Captial District (DPs), 1122 Municipalities (MNs), 58 protected areas (PAs), 39 Regional Autonomous Corporations (the authorities responsible within their respective jurisdictions for regulating the environment and renewable natural resources in Colombia; CARs) and 916 Collectively Titled Territories (including both indigenous reservations and afro-descendant communities; CTTs). In addition, we provide a list of known bird species richness for the above geographic units found in the available literature. The information provided here can be used as a baseline for a huge number of initiatives concerning the study, conservation and sustainable use of bird species present in Colombia, providing access to key features of bird distribution that should facilitate decision-making.

The natural vanilla essence is obtained principally from the fruits of the species Vanilla planifolia, a member of the Vanilla aromatic clade, and native to the neo-tropics. Colombia is an important center of diversity for the genus with 22 Vanilla species reported, of which 18 belong to the aromatic clade. Colombian native Vanilla species comprise important genetic resources for the vanilla crop. Although there is no tradition of cultivation of vanilla in the country, these species have potential for establishment in sustainable agroforestry systems. Nonetheless, Vanilla, like many orchid species, is subject to both intrinsic and extrinsic conservation threats. This article outlines an integrated strategy for conservation, incorporating in situ, ex situ and circa situm measures to ensure the conservation of Vanilla species in Colombia, and to promote their sustainable use in community-based cultivation programs. This proposed strategy is also relevant for conservation managers in other countries with native Vanilla species.