Abstract
Genomic Scaffold Filling problem forms an important class of problems, and has been paid lots of attention in the literature. In this paper, we study one of the Genomic Scaffold Filling problems, called One-sided-GSF-max-BC problem. In this paper, we give a new approximation algorithm for the problem. For any given instance of the One-sided-GSF-max-BC problem, auxiliary graphs are constructed based on the given instance and the relation between maximum matching in auxiliary graphs and optimal solution is studied, which results in an approximation algorithm with ratio 2.57.
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