5′ end-dependent translation initiation of hepatitis C viral RNA and the presence of putative positive and negative translational control elements within the 5′ untranslated region

Abstract

Hepatitis C virus (HCV) is a distant relative of pestiviruses and flaviviruses, but it has a 5′ untranslated region (UTR) with some features structurally similar to that of picornaviruses. In order to test the role of the 5′ UTR in controlling the expression of the HCV polyprotein, we fused full-length or deleted versions of the 5′ UTR of HCV-1 RNA to chloramphenicol acetyl transferase (CAT) mRNA to monitor CAT activity in vivo. We found: (1) the full-length 5′ UTR of HCV-1 RNA is translationally inactive while 5′ deletions which mimic a 5′ subgenomic RNA detected in vivo are active, (2) an efficient cis-acting element which represses translation is found at the 5′ terminus, (3) a putative element which enhances translation is found near the 3′ terminus of the 5′ UTR, (4) additional cis-acting elements including small open reading frames (ORFs) upstream from the putative enhancer element downregulate translation. We did not find evidence supporting the existence of an internal ribosome entry site in the 5′ UTR of HCV-1 RNA. These data suggest that HCV may employ a distinctive translation control strategy such as the generation of subgenomic viral mRNA in infected cells. Translational control of HCV might be responsible for some of the characteristic pathobiology seen in viral infection.